RNA id: XM_034313965.1


Basic Information

Item Value
RNA id XM_034313965.1
length 2505
RNA type mRNA
GC content 0.44
exon number 7
gene id arl8a
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 431512 ~ 439177 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCTGTGCGATAGGGGGCGCAGTTGGCTGGTGGCGTGGAGGCGCTGCTCttcttctgtccttctctccaTCTAACCCGCATTGTTTAGGATCAGCTGTGTGTCCGAAACCCCACCCAAGCAagggcaaagagagagagagagagagagagagagagagtcattcGGAACACACCCGCAGTGGACCGGAACCGAGCGTCGAGTTCTCTATCGCTCCgtctccttgttttttttttctcctccgtTAAAGCCGGAAGgtttcatccctccatcttccCTTcatccttcctccttcctccatcctccggGCCGGAGTCAGCTGATCGATACAGACACcaccaccttcatcatcatcaacatcatcttcatcatccaggtccagctccagctccagctcgaGGTCCAGCTCCAGGATGATCGCGTTGTTTAATAAACTCCTGGACTGGTTTAAAGCTCTGTTCTGGAAGGAGGAGATGGAGCTGACGCTCGTGGGCCTGCAGTACTCCGGGAAGACCACCTTCGTCAACGTGATCGcgtcgGGACAGTTCAGCGAGGACATGATCCCCACCGTCGGCTTCAACATGCGCAAGATCACTAAAGGAAACGTCACCATTAAGctgtgggATATCGGTGGGCAGCCGCGGTTCCGCAGTATGTGGGAGAGATACTGCAGGGGGGTCAGCGCCATCgtgtaCATGGTGGACGCTGCAGATCCGGAGAAAATCGAGGCGTCTAAAAACGAGCTGCACAACCTGTTAGACAAACCGCAGCTGCAGGGCATTCCTgttCTGGTGTTGGGCAATAAGAGGGACCTGCATGGGGCGCTGGACGAGAAGGAGCTGATCGAGAGGATGAACCTGTCTGCCATCCAGGACCGGGAGATCTGCTGCTACTCCATCTCATGTAAGGAGAAGGACAACATcgatatcACACTACAGTGGCTGATCCAGCACTCCAGAACCAGGAGGAGCTGAGAGGTGGAGCTTCTGATTGGAGAAACAGTATCACGTGACCACCTGTATGCCAAGTCCCGCCCCTTTTGGGTTTATGCCCCGCCCCTGCTCTAACTCTCTAAAACGACTTTCATTCCTGTACAAATTGTGATAAATATGATTTGCACTGTTTAcagttttatgtttgttttgtttttttttttttttttttaacttttatgcattttttataaCAACGAATTTCAGACCAGACGGATTTCACAGTCACATGATgaagacatttttgttttttttgtgcatgtttgtgtgtatgtgtctttcAGCCTTTTCATAGATCAGTAGTTGGTTATACGATAAATCACGCTGTCTTCATCGAGGACACTTCAGAATCATTGTCACGTCAGCGTGTGAAAGTGGACGTTTTGTGATAATATCGTAAACCGTGATAAAATGATTAGGCGATTATCCTAATAACGAAATCATGCGGACGCACACCTTCATAACTCAGACTGAGACGATAGTGACGTTTCACACTAATGTGgttttttgtttcatgtttgcctttgttttgtgtgtgtgtgtgtgtgtgtgtgtgtatgtttaaagaaaaggtcctaaaaaaaaatatccacgATGTCTCTTCATTCCCAGCGTAGTCAAGGCTAACGTAGCTAACACGTAATGAGagcttatagcctccagtttagcatcgtGTGTATAAACTACAGCATGCATTAAAGTTTTTTAAGTGGTTGTGTATTAGCAACAACATGCCGTTGTTTTGcgtcaagtgtttttttttttccctgtgtgtgttgtacagctTACCTGTTGCACCTCACtcctttaatcacacacacacacacacacacacacagagtcattgttctgttttgttttctggacagtatgaatattaatgttataATGACTTCCCTTGTGTGTGATGAGAAGTGTTTTAATCTAAGAAGTGAAATGAGAAATTAAATCACAAAGCTGCCGGATTCCTGggtcagctagctaactgtgttCTCAGTTTAAGGTGGAATAGTGTTATTTTGGACTTAAAGCTCCAGTCCACCTTCAGTCTGTTTGCTTTCTGACCCACGAGTCCAGATTTGTAGtcgttttcatttatttaaagaaatgaaaagaaatgaacgGTTCTTCTTTCAGTTTTTAAGGTGCCACTGAGTTGCATTGTTATTACATCAGGTTTAAACTCCAGTCCACCTTAAATCAGTCATTCTGCGCTGTTTAGGCTCAGTTCATCAGAGACGAATTAAAGGTGTGAACATTtgtcctgttttatttatttcttttatttgatgTCCTGATCATCAGCAGCGTTAAATCTCCAGTTCCACGTGTGTACAGTTCGGTCTTTTTCAGACACATGGTTGGTTTTAAAACCTGTCCTGATTTTTAACTCGATGttgtaaataacaacaaaacccAAAACTCTTCTTCTGACTGgactttgagagaaaaaaaaaacaatctgttgtgatttctgtgattaaaattaacaaatataaaaacactccATGGTtta

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07955 ARL8; ADP-ribosylation factor-like protein 8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU354974 lncRNA upstream 71254 356762 ~ 360258 (+) False dram2b
TU354966 lncRNA upstream 77080 351660 ~ 354432 (+) False dram2b
TU354931 lncRNA upstream 177280 251723 ~ 254232 (+) True G299528
TU354922 lncRNA upstream 195022 236076 ~ 236490 (+) True G299522
TU354869 lncRNA upstream 214103 209994 ~ 217409 (+) True G299482
TU355032 lncRNA downstream 79240 518417 ~ 520943 (+) False cdkn1a
TU355052 lncRNA downstream 126099 565276 ~ 565508 (+) True G299618
TU355059 lncRNA downstream 162381 601558 ~ 602113 (+) True G299625
TU355092 lncRNA downstream 239772 678949 ~ 683096 (+) False LOC117599902
TU355093 lncRNA downstream 239772 678949 ~ 726922 (+) False LOC117599902
XM_026912036.2 mRNA upstream 22062 406108 ~ 409450 (+) True btg2
XM_034314151.1 mRNA upstream 50969 376562 ~ 380543 (+) False zgc:153675
XM_034314150.1 mRNA upstream 50971 376565 ~ 380541 (+) True zgc:153675
XM_034314472.1 mRNA upstream 73146 351588 ~ 358366 (+) False dram2b
XM_034314355.1 mRNA upstream 105205 315968 ~ 326307 (+) True wdr77
XM_026935274.2 mRNA downstream 52868 492045 ~ 495637 (+) True apobec2a
XM_026935277.2 mRNA downstream 64292 503469 ~ 508353 (+) True srsf3b
XM_026935276.2 mRNA downstream 76363 515540 ~ 520513 (+) True cdkn1a
XM_026935275.2 mRNA downstream 79390 518567 ~ 520513 (+) False cdkn1a
XM_034314462.1 mRNA downstream 83199 522376 ~ 530478 (+) True tmcc2
TU354973 other upstream 71254 356762 ~ 360258 (+) True dram2b
XR_004580271.1 other downstream 79390 518567 ~ 520887 (+) False cdkn1a
TU355161 other downstream 403803 842980 ~ 844811 (+) False LOC113539702
TU355179 other downstream 424161 863338 ~ 864888 (+) False fbxo42
TU355411 other downstream 1057683 1496860 ~ 1498487 (+) False LOC117599925
TU355413 other downstream 1057683 1496860 ~ 1497627 (+) False LOC117599925

Expression Profile