RNA id: XM_034313990.1


Basic Information

Item Value
RNA id XM_034313990.1
length 3737
RNA type mRNA
GC content 0.44
exon number 9
gene id podxl2
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 14630530 ~ 14661741 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gagtggaataaaattgccaaatcatgATGGGTGAAGTTTTATCCTCTTACCCAAATGGACTGGGTgttgtattacaagcaaaaggtgctttaacaagGGTTAAATCTGCAAGCATGCCTGGTACACCTCTTCATCACCTCATCATAGGCTCCTCTCTTGTGCTCATCGCAATTTCTAAAGTTCTTAATGGCAATCCAACACCTCTGTCCAGCTCTGCTTCATCTCAACCCATCCTGGATGTTTCTGTTGGTCTGGAGGAACATGATGGTGTCCTTCGGGATGCAGAAAATCCTGCCATGCCTGCTTTGGTAGAAAGTTCCCAGGAGAGTTCTGGGTTCTTCAGTGAGGACAGTGAAGAGAATAAGGGTCCTCTGGCATTGCGGAAGTGGGATGTTCAAGCAGAGCTCAACTCCAGTCTGGATGCAGATTCATTGATAGGTTATAATCCATCCTCCACTCGTCCTTCGTCTCTCACCCTTCGCCAGGCTCCCAAGAAGTCTAATTCCTCCTCGCCTTTCTTCCTCCCTGTGGTTAAAGCTTCGGACCCAGAACAGTGGCATAGGGAGATTGAGGCCAGTGGTTTTCCAGTTCATTCTTCCTCTCCACTGTCTACCACAGCTGCAGCTCCACTCATACACTCCTCcgtcacagacacacactcctccatcacTGAGTCCATGGCTGGGTTCTTTGGACCAAACAGCCCCCTGCCTGAGGCCACGGCTGGTGCTGACAGCCCTGAGGAGGACTTTGATGATGTAAGAGAGAACATCCTCACCCAGGCACCTACCATTCCAGAAATAGGGGTGTTCTCTAGCCAAGTGCCCTTCGAGCCTGATGATTCCCACCAGGACGACTCAGAGGAACAGGAGGAAAATGAGGAGATTGTGGTGTTCCCAACAGAGGTAGATGGACAGGAGGTAGATGTTTGGAAGCCGCCCTCTTCAGCAGATTCGGACACTCCTGTTGTGGCCTTCACGGAGACAGCCTGGCATGAAGCAgggggggaggaggaggaggagtcaGAGGAGTCTGAGCTTCGTCATGGAGGCACTGATTATCTGTCAGAGACAGACCTGCATGGTTCCCAAGAAGCAGTGCAGgtAATTTGTGTTGACTGGAGTGATCTGGCAGGAAAAGGCTATGTCATCCTCAACATGTCAGAGGATTACGATTGTgATAAGTTTCGTGTGGAGAATGGCGACAGGCTGCTGGAGATGCTGGAGAGCACTTTCTCCAGGAAGATGAACAGTCCACAGGGCTCGTGGCTCATCTCGCTTAGCAAACCCACCAAACAGGAACACCAGCTTCTCATGACGCTTGCCAATGAGCaggGTGTCATTCCTACTAAAGATGTGCTGTCAATGCTGGGAGAAGTACGGAGAGGATTAAACGAGATCGGCATTCAGAACTTCTCCAGCGTGAGCACGTGTCACTCCAGACCCAGCCAGACACGAAGCGATTACGGCAAACTGTTTGTCGTGCTGGTGATCAtcggatcagtgtgtgtgatcatcATTGCATCTGGGCTCATCTACATCTGCTGGCAGCGCCGCCTTCCCAAAATGAAAAGCATGTCCCGTGGTGAGGAGCTGCATTTTGTGGAGAACGGCTGCCATGACAACCCCACGCTGGACGTGACGAGCGATGGCCAACCGGAGCCACAGGAGAAGCAGCACAGCACCAATGGCGTGCCAGCAGGCACTGGAGCTTGGCAGGGCATGCCAAACAAGTCGGGCAAAGAGGAGGAAGACAATCAAGAGGAGGATACCCACCTCTAATCAGGAGGAGAacaaagggaaagagaaaaattTGTTAGAAAAGTAAGGTATTCCATCAGGGCACAGAATACCAGAGCTTTTTTTCCAACTACCTGCTGAATATTTAAAGTGATTGTCTTTGGCTTGTACGGTCTTTTATTTATCTGCACCAGCAACAGCACGTTCATGTTCAATCAAAGTGCCGTGGGTTGATTCTTTAATAGTGCAAGCACAGAGAGGCGTCAGTAAAAATTTTAGCCACGCTAATTGAAGAGTATTTCGTTCTGGGCGCTAAGCTAGTAATTATCCTTAGCTGTGAAGAAACGTATTGAAAACCTGCCAAATttcgtcttcagtaagtgtTGCACTGTTAGAACTCAACAGGATAGCAGTATTTCATAGGATCTTAATGCATAATGTATTTCAACTGGCTATTACAGTACACGCATATCCTATTTTCTTTTGTATGGATGCATCTAGTACACTTTTGGAAGCAGTACATTAGCGCAGTGTGTTTTAACATGGTGAAGTTGCAGCCAAATGGCCTTGCTCTTTAATCGCTTGTCGGAATGGCCTCCCTACAAATGAGATGTTTTTCAATGTTCTTTGTTTTCAGTGTCATAGTTAAGGTTCTCGCCAGCTCCACAGAGGGTCTCAcaaatatttactgtaaaaattaCACTTCACAGGGCTCGCATTTGAAACAAGCAGTTAAACCTCattctgtttgatttttttttttttttttttttttttttttaatcttaatgcCAAAATGAAGGTAGAGCAAACAGAACCTGTGTAAGACTAAGGAGTGGATGCCTGTGATGTATGCATTTTTGctacttttaaagaaaaactccaTCAATTATTCAACCTAATTTCAATCCACTACATCTCTATGGTGTGTTTAATTACCAAAGATGAGAATTTTGGCATTTGTCCTTGTactatgaaaagaaaaaaaagaagtttccTAGAAACTCATGtgatttagagtagccagtccacctgtgggcatgtttttggtggaaggaaactggagtacaCAGAGGAAATCCACATGGACATAGGTAGAATATTGCACCAATGGTTATAGATGggattcaacaactgcccttgaGTACAGTACAAGGGTAAAATTTCTTTTCTGTGGTAATTACTACAGTTGCAGTGGGTAGATATTAGGTTGAAAAACTCTGGAGTCTACATTTAATGAATGATGGAGTTTAAACAAAGGCAATTTCTCTGTGTACAGACTTCATTTAGTATTctaagtgaaaataaatcagttcCCTGTGGTTTACAGTGCAGTCACATCAGCATATCTGATATTAAATGGTATATTAGTCACACTTTATTTCACATAGCTCTTATTACTACATaaaaaacagtgtaaacaaAGATCAGTTACAACGTCCTGATTTATGGAAATATTCAATACAACATGGAGCTACCTATCTGTACCACAGTGTGTTGTAAAGCCATACTtacagctaaataaaatgattaataaaggGTTGTCTCACTGTTGGAAAGTACCTTTTTCAAATAGCCAAGACAGGTATTTCATCAGGGAATAATCTACAGGAGTAATCTCACCCaaatttttttccataaaaccTACCCCCAAATCTTCGTGTACTTGCTTAAACAAATTGTAATAGCAGGGATAGTCAGTAGTGACAAATTTATGTTCACAGCAGAAATATATTATCATCTGCATAACAATTTGGCTTTCAGATATTTGGATGTGGGGTCGAGGTGGAGGAATGATACCAAACGCAGCCAACAGGCTCCAgctgtccaagatggctgcctaAATAATGGTATAGTGTTTAGCTAcatgtgatattttttataGTAAGCAGTGATGGCTGGTCACGATATTAGATGACAGGCTAAAATCTACAATCTATCAGTAGTGTGAGAATGAAACTATTAAGCCTAATAAGAGtgatgtggggcaaactatta

Function

GO: NA

KEGG:

id description
K06818 PODXL2; podocalyxin-like 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU364909 lncRNA upstream 31982 14598393 ~ 14598612 (+) True G307976
XR_004580186.1 lncRNA upstream 39773 14583567 ~ 14590821 (+) True LOC117599878
TU364901 lncRNA upstream 41362 14589025 ~ 14589232 (+) True G307971
TU364494 lncRNA upstream 482149 14148141 ~ 14148445 (+) True G307588
TU364114 lncRNA upstream 533808 14096270 ~ 14096786 (+) True G307281
TU364930 lncRNA downstream 38256 14699997 ~ 14780758 (+) True G307997
XR_003403804.2 lncRNA downstream 99090 14760831 ~ 14763174 (+) True LOC113537908
TU364954 lncRNA downstream 137232 14798973 ~ 14800142 (+) True G308018
XR_003403808.2 lncRNA downstream 731868 15393609 ~ 15407641 (+) True LOC113537967
TU365380 lncRNA downstream 750358 15412099 ~ 15413822 (+) True G308404
XM_026932898.2 mRNA upstream 1987 14616988 ~ 14628607 (+) True mcm2
XM_026932763.2 mRNA upstream 14700 14613763 ~ 14615894 (+) True ccdc51
XM_026932966.2 mRNA upstream 20430 14599257 ~ 14610164 (+) True LOC113538112
XM_026932457.2 mRNA downstream 12749 14674490 ~ 14680861 (+) True LOC113537808
XM_026932459.2 mRNA downstream 14049 14675790 ~ 14680861 (+) False LOC113537808
XM_026932608.2 mRNA downstream 103445 14765186 ~ 14789849 (+) True slc6a6b
XM_026932607.2 mRNA downstream 107853 14769594 ~ 14789849 (+) False slc6a6b
XM_026932594.2 mRNA downstream 351124 15012865 ~ 15023674 (+) True cand2
TU364869 other upstream 109447 14514610 ~ 14521147 (+) False gpd1b
XR_004580240.1 other upstream 154209 14370788 ~ 14476385 (+) False asic1b
TU363207 other upstream 2168058 12457601 ~ 12462536 (+) True G306480
TU362774 other upstream 3114781 11515059 ~ 11515813 (+) True G306103
TU362623 other upstream 3149494 11480669 ~ 11481100 (+) True G305955
XR_004580181.1 other downstream 1827620 16489361 ~ 16501684 (+) False amigo3
XR_004580182.1 other downstream 1827620 16489361 ~ 16494139 (+) False amigo3
TU366607 other downstream 2599238 17260979 ~ 17263663 (+) True LOC113537865
TU367680 other downstream 4025656 18687397 ~ 18692014 (+) True snrpe
TU367679 other downstream 4025712 18687453 ~ 18692014 (+) False snrpe

Expression Profile