RNA id: XM_034313997.1


Basic Information

Item Value
RNA id XM_034313997.1
length 2730
RNA type mRNA
GC content 0.47
exon number 9
gene id gnai2a
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 1926177 ~ 1977132 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCGTGACTGTGGTGGCAGTAGGGAAGTTGGGAGCAGCTCGGCTCGGGTGTGGCGGTTTGATAGAAGGCTTTGAAACAAATCAGAGCGGCGCGCGACGGCTAACTGACCATCGTAAATAACggctttttctgttttaacGGTTTTCTTTTCCACCTGAAACCGAGCGAGAGGAAGAAAACACCGAGCGGCGCTCACACGGGGCTTCTGcttgtttttataatatttcagCTTCTCGCTGGAGAAAGTTGCGTGAAAAAATCCGTCCgaacttttttcctctctctctctctctctctctctctctctctgtaatgcTGGAGTGTTTCCCACCCGCGTCATGTCCGACCTCTCAGCTCGGGTCTTGTGTTTAGTTTGGGAtccttaaacaaacaaacaaacaaaacaaacacaaaagaaacctgctgttttgttttgatttgacgTCGCGCGAGCTCAGGTCTCGTCAGTGAAGAGCTAGAGCTAGAGCTAGCTAACTGTTTTTCTCGGAAGAGGGAAGTGCGGTAGAGTCtgggagcaggagcaggagcaggagcagcagtgaGTGGAAGGTGGTGGTGaaggtggtgttggtggtgttgtgtgttaaagctgtggaAAGAGTCGCTGAGCCTCTCCGATGGGCTGCACGGTGAGTCAGGAGGATAAGGCGGCGAGGGAGCACTCCCGGGACATAGACCGGACCCTGCGCGAGGACGGAGAGAAAGCAGCCAAGGAGGTCAAACTGCTTCTGCTCGGTGCGGGAGAGTCGGGGAAGAGCACCATAGTGAAGCAGATGAAgattATCCATGAGGATGGATATTCGGAAGATGAGTGTAAGCAGTACAGAGCCGTGGTCTACAGCAACACCATCCAGTCCATCATGGCCATCATTAAAGCTATGAGCAACCTCAAGATAGACTACGAGGAACCAGCCAGAGCtgacGATGCGAGGCAGCTGTTTGCCCTGGCCGCAGGAGCGGAGGAGCAGGGCCTGTTCCCTGAAGATCTCTCTGGCATCGTCTCTCGCCTGTGGGCCGATGGAGGAGTGCAGAACTGCTTCGCCCGCTCCAGAGAATACCAACTCAACGACTCAGCTGCTTactACCTGAATGACCTGGAGAGAATAGCCAAAGCGGACTACATCCCGACCCAGTCTGACGTGTTGAGGACTCGAGTGAAGACCACGGGCATCGTAGAGACACACTTCACCTTCAAAGATCTCCACTTCAAGATGTTCGACGTTGGAGGTCAGCGTTCCGAGAGGAAGAAATGGATCCACTGCTTCGAGGGCGTCACTGCCATCATCTTCTGCGTGGCCATGAGCGCTTACGACCTGGTGCTGGCCGAGGACGAGGAGATGAACCGCATGCACGAGAGCATGAAGCTGTTCGACAGCATCTGCAACAACAAGTGGTTCACGGAGACGTccatcatcctcttcctcaACAAGAAGGACCTGTTTGAGAAGAAGATCGCACACAGCCCTCTGACCATCTGCTTCCCCGAGTACACAGGGTCCAGCACGTACGCCGAGGCGTCCGAGTTCATCCGCACCAAGTTTGAGGATCTGAACAAGAAGAAGGACACCAAGGAGATCTACTCGCACTTCACCTGCGCCACCGACACCGAGAACATCCAGTTCGTCTTCGACGCCGTCACCGACGTCATCATCAAGAACAACCTGCGCGACTGCGGACTGTTTTAGAGGAAAGGCCCACTGACTACGGgcccagaCTTGAACTGGAGTGATGAGCAGGTGAAGGTGTTCTGACTGACTGCACTGTAACTGTTTCCTGCTTCAGCCTGCTTTTGGAACGGCCGAGTCCCCGAGTGCTCAGAGCATTCGCCATTTCACCGACCGTCACCTTCCCCGACCCATCAGTGTTcccctccatccatccctccatctctctctctctctctctctctctctctccctcctcctcactCATTACATCATGTCTCTTTTTCCTGTCTGATTTTAGACTGCAGCTTCATCGTCTGATCGTTATTAACCTCCTTCGGGCTTCAACCGCAAATCAcgatttattgtatttttttattttaatcaatgtttttttttttttttttttctttgtttatttttgagtaatagcagagctaaaaaaaaaaaaaaaaaaaaaacaaaaaacttttataTGAATACTTTTGTTTTAGTCTAGAGAATCTGATGTGcagattttattaaacatttaattgcaTAAAGTGTTTTTATAGAAGCAGCAGATTCACAGAGAGAAAGTagattgaaaaaaaaggaaagattttgtaaaaaataatgtttacacGTCGTCATTTATATCCAAACAAAACATCATCGTGCACCGCAGAGTCTCTACAGACATTCCTTTctaaaattatgttaaaaaattatttaaaacattaaatacacaatCTGCAGAAATGTAAATGCGGATTAGTGAGAGTTCAGGACTCGGAGCTGTCAAGTGTGTATGAGGATAGATCTCTCTCATCCATTCCATCCTGtgcctttattattattattattattattattattatgtattattatccTCCTcacatccatctctctctctgtacactaTGACGCCATGTAAGGAGAAAAAGTTCTTATAAGTAATTAGTCAAAAAAATCTAATCGATAAAAAAAGGGTAGTGTTTTTGCTAAACGTTAAAATGATAAGTCCTgtataatgatttaatttaaataaaagttaagtCACTAGA

Function

GO:

id name namespace
GO:0007188 adenylate cyclase-modulating G protein-coupled receptor signaling pathway biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0031683 G-protein beta/gamma-subunit complex binding molecular_function

KEGG:

id description
K04630 GNAI; guanine nucleotide-binding protein G(i) subunit alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU356290 lncRNA upstream 1710 1920527 ~ 1924467 (+) True G300479
TU356266 lncRNA upstream 68776 1854701 ~ 1857401 (+) True G300467
TU356239 lncRNA upstream 103838 1820621 ~ 1822339 (+) True G300447
TU355461 lncRNA upstream 285749 1626093 ~ 1640428 (+) True G299916
TU355401 lncRNA upstream 303593 1620800 ~ 1622584 (+) True G299862
XR_003403969.2 lncRNA downstream 30478 2007610 ~ 2021578 (+) True LOC113539753
XR_004580183.1 lncRNA downstream 30478 2007610 ~ 2009813 (+) False LOC113539753
TU356296 lncRNA downstream 79273 2056405 ~ 2060641 (+) False mon1a
TU356488 lncRNA downstream 211334 2188466 ~ 2188913 (+) False camkvb
TU356498 lncRNA downstream 217156 2194288 ~ 2195719 (+) True G300649
XM_026935298.2 mRNA upstream 5723 1878603 ~ 1920454 (+) True slc38a3a
XM_026935300.2 mRNA upstream 5723 1878605 ~ 1920454 (+) False slc38a3a
XM_034314389.1 mRNA upstream 5723 1889311 ~ 1920454 (+) False slc38a3a
XM_034314189.1 mRNA upstream 113241 1760864 ~ 1812936 (+) True cacna2d3
XM_034314190.1 mRNA upstream 113241 1763459 ~ 1812936 (+) False cacna2d3
XM_026935221.2 mRNA downstream 17081 1994213 ~ 1998435 (+) False inka1a
XM_026935222.2 mRNA downstream 17370 1994502 ~ 1998435 (+) True inka1a
XM_026935223.2 mRNA downstream 18867 1995999 ~ 1998435 (+) False inka1a
XM_034314432.1 mRNA downstream 75951 2053083 ~ 2059985 (+) True mon1a
XM_034314431.1 mRNA downstream 75951 2053083 ~ 2056606 (+) False mon1a
TU355411 other upstream 427690 1496860 ~ 1498487 (+) False LOC117599925
TU355413 other upstream 428550 1496860 ~ 1497627 (+) False LOC117599925
TU355179 other upstream 1061289 863338 ~ 864888 (+) False fbxo42
TU355161 other upstream 1081366 842980 ~ 844811 (+) False LOC113539702
XR_004580271.1 other upstream 1405290 518567 ~ 520887 (+) False cdkn1a
TU358141 other downstream 2489945 4467077 ~ 4469174 (+) False LOC113539599
XR_003403967.2 other downstream 4686942 6664074 ~ 6779358 (+) False cpne5b
XR_004580199.1 other downstream 6524506 8501638 ~ 8558911 (+) False nfasca
XR_004580200.1 other downstream 6524506 8501638 ~ 8558788 (+) False nfasca
TU362120 other downstream 8535539 10512671 ~ 10513270 (+) True G305515

Expression Profile