RNA id: XM_034313999.1


Basic Information

Item Value
RNA id XM_034313999.1
length 2059
RNA type mRNA
GC content 0.49
exon number 3
gene id si:ch211-193i15.1
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 19883826 ~ 19894420 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cacacacacatacttggaCTCAGAAGGATGATCTGCTGTGTGCACATGCTCTCCAAAGGTCACTCTGGATTTTTCAGCTCTAAGGATGGACGGTGTCCTGGAGGCGACGATCGCTCTGTGTGGATGCAAAGTGCTCTGCAGCATTCTGTGTCTTCCTGCTTTCAAAGACTCCATCTCCTCTGTCAGCCTGTGTTGTGTTTCCCTCTTACTCTTCACTGATCTCTCCATCACCAtgttcctggtgTACCTCTGGTCTGCTGCACCCAGACCGATGTCTTTTCACCCGTCTTCAGATGTCATCGCCCTGCGCTTCATGCTGTTCCTTAGCGACACGTATGAGGCTGTGTTGATGCTGACCCCGCTGCTGGTGGCTGTGGAATTGCTGGCTCGTCTCTTATGGGGTGGAGAGACTGTGACAGCAATTACGGATGAAAAAGAAGCTAAAGAGGACACGTTGCTTTTAAAGGACGTTGATGGACATACCTGGGAGACTGGACAACAACagaaaggagaggagaaaggGAACACTGCGGCATTCTTAAAAGCTTTAGGTTTCCTTGGTTGCCTGATGCTATGGTTCATGTGTGGGACATACGCTGGGTCTAGTTGGAGGCAGGAGCAGGTGATGGTGAGATCCTGCCTGGAAAGAGGCAGCTTGCTCTCGACATGCCTCCCCTGCCTCCTCACTGCTTCTTCACCAGTTAGCGGGCAACTATTTTGGGCTCTACCTGCTGCTATTCTCTTGCTAGCATTCACTGCAGTTCTGAGCTTAATCGTAGCAAAGCTGACCCCCAGAATTGTTAATCCAGAGCTGCTCGAACGCACAGAGAACTTTGATGCTCTCAAACAAACGCAAACACATCCACCCACGCCCGAGAGGACCTCTGTTTCTGCTGCGAGCATCTCAGACAATTGCAATGTTGACTCAGAAAAGACAGCGAACAGCTGCGCCATTCACAGCTCGCATAATAAGCGACGATGGGCTCACGGAAAGCCAGAGCCATTATCCTGGAGAACAGAGCTGGCTGACAGCTGTAAATTAAAAAGCGAGAGCGTCACGCTCGTCTTGCAAGTGCACTGCACAGCCCCGCACCCTCACAAGAGCCGGCTTTGGCAGACTGTGAGGGAAAGTCCTTGCCTGAGGGGAGAACTAATGACAGGACTGCTGTGTGGGCTTCTGGTGTGTATCTTTCCTACAGTTCTCAGCACCAACATACTGCTCGTCAGCAACCTGGACACACTGGCTGTGTACGTTGTGAAACATCTGCTCACTCCGCTGCACAGTAAATGAGAGGTTAAGAGGGATGCGTGTTCCCACAGCACACCTCATGCCGAACATTCCTACATTCCAAGGTTATTTGTAAAATTGGAAATCCTGGATGGGTTCAAGCGCACACACGAATGAGCACTGACTGTTTTCTCAACTGATGTATTTTGATCAtgaattcatcttcagtaactgttttctCCTGGTCAGAGTTACTGTGGAACCCGGGAatactgggcacaaggcaggaaatCGTTTAGGTTAGGGGGATATTTAGTTTCGCCAGTTCATATGCTGGCAAGTGAAGGAAACTGGAggaccctgaggaaacccacacggagaACAGTTTATCCGGGTCAGGCTGGTGGTGCTTCCAGAGTCCATCCAAGGAACTCTGCGTGAGAAGCGGGAATACACATTGAATGGGAAGGCCagtacatcacagggcacaatgcacacacacactcacacctagaggcaatttagcatagccaattcacctaccggcatgtttttgggaggaaactggaaaacctggaggaaagccATATGGATACAtaaagaacatgcacagaaactccacacagaaaaTAACCCAAACTCAGGATCGAGCCCCAAActgtggagctgtgagacaaCAATATGTGCACAAGGGCTTTTGCTGGGGATTGTTTATAGTGTGTAGTTCTGATATTGTCTGATTGAGTAGTTATGTTAAACCATGTTCTTTGGATTTGtaatgttcaataaataatgcaAGCCTTTATTAAATGAATAACTGCATGAGTACTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU368220 lncRNA upstream 28543 19848467 ~ 19855283 (+) False si:dkey-264d12.5
XR_004580176.1 lncRNA upstream 35542 19839421 ~ 19848284 (+) True LOC117599874
XR_004580177.1 lncRNA upstream 38279 19839421 ~ 19845547 (+) False LOC117599874
TU368219 lncRNA upstream 47262 19835679 ~ 19836564 (+) True G310880
TU368221 lncRNA upstream 72091 19811438 ~ 19811735 (+) True G310882
TU368245 lncRNA downstream 5458 19899878 ~ 19905766 (+) True G310905
TU368246 lncRNA downstream 5458 19899878 ~ 19905766 (+) False G310905
TU368565 lncRNA downstream 66681 19961101 ~ 19961315 (+) True G311204
TU368568 lncRNA downstream 68094 19962514 ~ 19963668 (+) True G311207
TU368586 lncRNA downstream 101644 19996064 ~ 19996270 (+) True G311225
XM_026932462.2 mRNA upstream 15345 19853448 ~ 19868481 (+) False si:dkey-264d12.5
XM_026932461.2 mRNA upstream 15345 19857064 ~ 19868481 (+) True si:dkey-264d12.5
XM_026932463.2 mRNA upstream 15345 19857064 ~ 19868481 (+) False si:dkey-264d12.5
XM_026933004.2 mRNA upstream 49397 19815906 ~ 19834429 (+) True si:dkey-264d12.1
XM_034314141.1 mRNA upstream 74505 19787822 ~ 19809321 (+) True per3
XM_026932696.2 mRNA downstream 109985 20004405 ~ 20022989 (+) True mmel1
XM_034314369.1 mRNA downstream 146919 20041339 ~ 20053146 (+) False slc45a1
XM_026932557.2 mRNA downstream 146919 20041339 ~ 20050611 (+) True slc45a1
XM_026932955.2 mRNA downstream 241247 20135667 ~ 20145354 (+) True errfi1a
XM_026932768.2 mRNA downstream 285488 20179908 ~ 20237403 (+) True pax7a
TU368156 other upstream 99913 19768990 ~ 19783913 (+) False vamp3
TU368157 other upstream 99913 19768990 ~ 19783913 (+) False vamp3
TU368136 other upstream 366667 19508255 ~ 19517159 (+) False phf13
TU367971 other upstream 796020 19087025 ~ 19087806 (+) True G310681
TU367679 other upstream 1191812 18687453 ~ 18692014 (+) False snrpe
XR_004580241.1 other downstream 976232 20870652 ~ 20882365 (+) False hnrnpa1a

Expression Profile