RNA id: XM_034314015.1


Basic Information

Item Value
RNA id XM_034314015.1
length 7072
RNA type mRNA
GC content 0.50
exon number 55
gene id dock3
representative False

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 15138351 ~ 15368130 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACGAAACTTGAAAGCGAAGCTTGAAAGTTTGGGGCATGTTCATAGATAGGCGGAGAGCTGAAGTCAGAATGTTTATCAGGAACCTGATCTGCAGCTTCCGTGGCTCTCTGGCTCATGGCCTAATTCTAGAGATTGGAGAAACTGTTCAGATCCTGGAGAAGTGTGAAGGATGGTTTCGAGGATTCTCCACCAGGAAACCTAATGTCAAGGGCATCTTCCCAGCTAGCTATGTGTATCTGCGGAAGACTGTTGTCACCAACCGAGGgcAGTATGAGACAGTGGTGCCTCTCGAAGATCCCATCGTGACCGAAGTCACCTCCACTCTACAGGAATGGGCTGTACTCTGGAAGCAGCTCTATGTGAAGCATAAAGTGGACCTCTTCTATAAGCTGCGTCACGTGATGAACGAGCTGATCGACCTGCGGCGGCAGATGCTATCTGGTCACCTGACCCAGGATCAGGTTCGCGAGGTCAAGCGCCACATCACCATACGTCTCGACTGGGGCAATGAACACTTAGGTCTGGATCTTGTACCGAGGAAGGACTTTGAAATGGTGGATGCAGACCAGATTAGTGTCTCTGACCTCTACAAAATGCATCTGTCCAGCAGACACAGTGTCCAGCAAACCACATCACAGggggACAGCATGCGGCAGCGTCATGGTGATACGTGTCGGGTTCCCGTCCCTCACCACCTGTTTGTCAATCTCAAGAGCTTTACCTACAACACCATAGGAGAAGACACAGacattttcttttccctctATGACCTTCGGGAAGGCAAACACATAAGTGAGAAGTTCATGGTGAGGCTCAACAAAAACGGAGGCCCAAAGAACCCAGAGAAAATCGACCGGCTCTGTGCACTGTttacgGACCTGAGCAATAAGGATATGAAACGAGACCTATACATTGTTGCTCAGGTCATCAGGACTGGGCGAATGCTGCTGAATGACTCGAAGAAGGGCCCTCCACATGTGCACTACCGACGCCCATACGGATGCGCTGTGCTCGCTATGAGCGATGTGCTGCACACCATATCAGAACTAAAGGAAGAGAAAGACTTCGTGCTCAAAGTTTACACATGTAACAATGAGAATGAGTGGTTCCAGATTCATGAGAACATCATCCGCAAGTCCAGCACCAAATACACTGCACCCAGCACCAACTATGGTTTGATCATCTCCCTGCAGTTGCTCAGGGGAGAGACGGAACAGATCCGTAGGGAGAATCCTATGATCTTCAACCGCAGTGTCGCCATCACACGCAAACTCGGCTTCCCTGATGTCATCATGCCAGAAATGAAGATAGATGATTGTGATATCCGTAATGATTTGTACCTCACTTTGGAAAGAGGCGACTTTGAGAGAGGAGGGAAGAGCGTACAGAAGAACATCGAGGTCACCGTGTATGTGTTGTATGCCGACGGAGAGATTCTTAAGGACTGCATTAGCCTGGGCTCAGGAGAGCCGAATATTAGTGAACACCGTTCACTCGTCCTCTACCACAACAACAGTCCTCGCTGGAGTGAAGTGATCAAGCTGCCCATCCCCATCGACCGCTTCAGAGGCTCCCATCTGCGCTTTGAGTTCCGGCACTGCTCCACAAAAGACAAAGGCGAGAAGAAGCTCTTTGGTTTTGCTTTCACACCTTTAATGAGAGAAGATGGTACGACGCTATCCGATGAGTGTCATGAACTCTATGTGTACAAGtgtgatgAGAACACAACCTTCAGCAACCATGCTCTGTATCTGGGCCTACCCTGCTGTAAAGACGACTTTAACGGCTGCCCCAACATTCCCTCCAGCCTCATCTTCCAGCGTAGCACCAAGGAAACCCTGTGGATCTCCACTCAGCTCTCCTCCACCAAGCTCACACAGAATGTGGACTTGCTAGCTCTGCTGAAGTGGAAAGCTCAACCTGATCGTGTGATGGACATTCTGGGTCGATTGAGGCATGTTAGTGGAGAGGAAATAGTCAAATTTCTTCAGGACATCCTGGACACACTGTTCTCCATTTTAGATGACAACACAGACAAATATGGTCCTCTGGTGTTTCAGTCACTGGTATTCATCATCAATCTGCTCCGGGACAGCAAATACTACCACTTCCGCCCAGTGATGGACACTTACATCCAGAAACACTTTGCTGGAGCCCTGGCCTATAAAGAGCTTATACGCTGCCTGAAATGGTATATGGACCGCTCAGCAGAGGTCGTCCGGCAGGACCATATTCAAGAAGCAATGAGGGCCCTGGAGTATTTGTTCAAGTTCATAGTCCAGTCACGGATCCTGTACTCTCGGGCCACCTGTGGCATGGAGGAGGAACAGTTTCGCACCAGCATCCAGGAGCTCTTCCAGTCCATCCGCTTTGTGCTTAGCTTGGACAGCCGCAGCTCAGAGACTCTTATTTTCACCCAGGCAGCCCTGCTTAATTCCTTCCCAGCCATCTTTGATGAGTTGCTGCAGATGTTCACAGTGCAGGAGGTGGCTGAGTTCGTGAGGGGAACCTTGGGGAGCATGCCCAGTACCGTGCACATAGGCCAGTCGATGGATGTGGTGAAGCTGCAGTCCATTGCTCGGACAGTAGATAGCAGGTTGTTCTCTTTTCCAGAGTCAAGGAGGATTCTCCTGCCTGTGGTCTTGCACCACATCCATCTTCATCTGCGTCAGCAAAAAGAACTGCTCATCTGTTCAGGGATCTTGAGCAGCATCTTCTCCATCATTAAGGCCAGTTCGCTGGAGACCTCAgtgcaggaggaggtggagatggtggtggagagcttGTTGGATGTTCTGTTGCAGACGCTGCTCGCCATCATGAGCAAGTCGCAAGCTCAGGAGGCGGTAAGAGGCCAGCGCTGCCCACAGTGCACGGCCGAGATCACTGGTGAATATGTGTCCTGCCTGCTGTCCCTCCTGAGGCAAATGACAGACATCCACTTTCAGCACCTCCTGGACAACTTCCAGAGCAAAGAGGAGTTAAAGGAGTTCTTGCTGaagattttctgtgttttccgCAACTTGATGAAGCTCAGCATTTTCCCCAGAGACTGGAATGTGATGAGGCTCCTGACCAGCAACATCATTGTAACCACAGTGCAGTatctctctcctgctctgcaTAAGAACTTCACAGATGCTGACTTTGACTTTAAGGTTTGGAACTCGTACTTCAGTCTGGCAGTTCTGTACATCAACCAGCCCAGTCTGCAGCTGGAGACCTTAACCCCATCCAAGAGGAAGAAGATTCTAGACAAGTACGGCGATATGAGAGTCATGATGGCCTATGAGCTATTCAGCATGTGGCAAAACCTTGGTGAAAATAAGATCCACTTTATCCCAGGAATGATTGGACCCTTTCTGGGTGTGACCCTGGTGCCTCAAAGTGAGGTCAGGAACATCATGATCCCCATCTTCCATGACATGATGGACTGGGAACAGCGCAAGAATGGAAACTTCAAACAGgtggAGGCAGAGCTCATAGACAAGCTGGACAGTCTAGTTTCTGAGGGTAAAGGAGATGAGAACTACAGAGAGCTTTTTGGGTTGCtTACTCAGCTTTTTGGGCCCTATCCCAGTCTTTTGGAAAAGATCGAGCAGGAGACGTGGCGTGAGACAGGCATCTCTTTCGTCACCTCTGTCACTCGCCTTATGGAGAGGCTACTGGATTACAGGGATTGCATGAAGGGAGACGAGACAGAGAACAAGAAGATCGGCTGCACCGTCAACTTGCTAAACTTCTATAAGTCTGAGATCAATAAGGAGGAGATGTACATCCGCTACATTCACAAGCTGTGTGATATGCACCTGCAGGCTGAGAATTACACAGAGGCGGCGTTCACTCTGCTCCTGTACTGGGAGCTGTTGCAGTGGGAGGATCGACCCCTTCGGGAGTTTCTGCACTACCCGGCTCAGAGCGAGTGGCATCGCAAAGAGGATCTCTGCCGCAAGGTCATCCACTACTTCAACAAGGGCAagTGCTGGGAGTATGGGATTCCTTTTTGCCGAGAGCTAGCCTTACAGTATGAATCCTTATACGACTACCAAAGCCTCAGCTGGATACGGaaaatggAAGCAGCCTATTATGACAACATCATGGAGCAGCAGAGACTGGAGCCCGAGTTCTTCAGGGTGGGCTTTTACGGTCGAAAATTTCCTTTCTTCCTCAGGAATAAGGAGTTTGTTTGCCGTGGGCACGACTATGAGAGGCTTGAAGCCTTCCAGCAGAGGATGCTGGGAGAATTCCCACAAGCAATTGCCATGCAACATCCCAACCAACCAGATGAGGCCATTTTGCAGTGTGATGCCCAGTACTTGCAGATCTACGCTGTATCTCCAGTTCCTGAAAACGTAGAAGTGCTTCAGATGGACCGTGTGCCTGACCGAATTAAAAGCTTCTATCGAGTGAACAACGTACGCCGCTTTCGCTATGACCGGCCCTTCCACAAAGGCCCCAAAGACAAGGATAATGAGttcaagAGTCTGTGGATCGAGAGGACCACACTTATCCTCACACATCCCCTGCCAGGCATCTCTCGCTGGTTTGAGGTGGAGAAGAGAGAGCTGGTTGAAGTGAGTCCGCTGGAGAACGCCATCTCCGTGGTGGAGAATAAGAACCAGGAGCTGCGCACTTTAATCAGCCAGTACCAACACAAGCAGCTGCATGGCAACATTAACCTGCTTAGCATGTGTCTGAACGGAGTGATTGATGCAGCTGTCAACGGAGGCATTGCTCGCTACCAGGAGGCATTCTTTGATAAAGAATACATCTCCACTCACCCAGAGGACACAGACAAAATCACTCAGCTCAAGGACCTCATGCAAGAACAGGTCCATGTCCTGGGCGTAGGGCTGGCGGTCCATGAGAAACTGGTGCACCCGGAAATGCGTCCCCTGCACAAAAAGCTTATAGATCAGTTCCAGATGATGAGGAGCAGTCTGTGCCACggTCTGCCCGGCCTAGACAGACTGAGTGCAGCCTGCTCTGGACCCAGCAACCCACGAGCCATCCTCCCGTCCCATAATCCTATGAGCCCAGAGAGCATCAAACTCATGCACAGACACAGCCCATCTCTCTCTCGTACCGTGCGTCACTCCTCGTCTTCCCTCTCCTCCAGTGAGACGGGGAACCTCCTCATCCTCACTGACGGAGTGCTGATGGAGCATCCTGAAGAGCTCTACCGCATGCAGCCCAGTCCCTCGACATCCAGCCTGAGCTCTACTCACTCTGCTCCTCCTCAGATGATCAACTCAGGCCCCGGCAGCATCCGAGTCGGATCTCCATCACTGCCTGATCGATACAGGCACAACCGCGAGATGCTGATGCTCCTGCCAGCACATCGAGATCGGCCCAGCAGCGCCATGTACCCCAACCTCAGTGAGAACGGACAGCCTACCAACCTGCAGAGGGCCTTGTTTCATCAGGTGATCGGTCCATGCAAGCCATGCAGTGACCCCAATCTCTCTGTGGCTGAAAAAGTGCTGACTGCTCCTAGCAGTTGGAGCCTGGACAGTGGCACAAGAGACGCGCTTCCTTTCCTCTCGGCCCATGTGGGGGGTGTGATGGCTCCACCGGTGCCCCCTCGCAACTTTCCTCCTGGGCACTTCTCGATGCACTTTGATGCTTTCCAGCAGCAGATTGGTGAACTCCCTCCAGCTCTCCCTGCACGCTCCTTAAGAAAGTCACCTCTTCACCCCATACCCGCCTCACCCACAAGTCCTCAGTCAGCTCTTGATGGAAGTAACTCCACACTGTCAGGCAGTGCCAGCAGTGGCGTCTCATCCCTAAGCGAGAGCAACTTCTGCCCTTCCTCATCAGATGCTCCTGCTCTGGACTCGACACCCAGCTGCCAGACGTGGACCACGGACACAGACGAAGCGGAGACGCCCAGCACCGTTCGCTACAGTGTCTCCGAGCCTGACGTCCTGGACAGTCTAAAGCCAGCCCCCTGCCGCAGCCACTCGGCACCTGTGGGCGTCATGCCAGTGCTGCCTCCAGACGGGCACCACCATATCCACGCTGGACATGTTGGCCATTACCACCTCCATCAGCATGAGCCACCTCCGGCGCTTCCCCCCAAACCATACCTGAGAGAAGGCTGCATCCCAGAGGAGGACTCGAGACCTGTGCCGAGACCAATGCCACGCAAGATCTCCCAACCACTGCTCACCAACAAGGAAGAGCAAGCCAAAGTGGCATGGGAGCATGGGATCAGTGAGGAGTAGAGGCCAGTAGTGGGGCAGGTCAATTGCGTGTTGAGTGGTTGAAGCTGGGTTTGGAGAATTGTAGAATTGTAGAATGAGAGAATTTGATCTGGTTCATGTTACCTCCAACAAGATCTTTTACCAATCATCATAGGGGCCTCATTGGTCCTGATGCAAGAACTGAGTAAATCTCTTGGATGAACTTTCAAGCTTGTAGTGGTCTGGTTTATGCTTCATCAGAATTGCTTCTGGGAACGGTCTCAAAATGAACTTCTGAAAGCCTGTAATGTTCTTGGTTTTCAAAGCAGTAGGAGGTTCTTAATTATTTTCAGGCTGTCCATCAAATAATGGGGCCAGGGCAGTAAACAGGAATAAGTATTAACTgaaagacattttgtttttgtttttgtctgtttaaccAAAGTGGTGTCTCAATTTGCAGTAAGTGTATGAGGGTATAACAGTTTTTATACAGTTATAACAGTGTGACCTCATCTGAGAAATAGACAATCTCATATAGAATCACACTGCATCAGCAGTTTCGGACTACTAAAAATTAGTTAGATAGGCTACAAGTATCTCATAAGTTCCTCCAAACAACTGACAAGAAATATAAGAGATATTGAGTACATCATATTAAGAATATGAAGTTAGATTATACctgatgaatatgaaataaaatagttttttttatatatatataaaatcattaagtcaggaataacacacaatgggctgtgctgttataggaaaacaatccatGCTGAAGTGGGGTGATACAGCTTGATGTGAAGCAgacttattttcctataactgcatgattacatttttatatttattaattaatgtcatGTCACGCTTTTtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU364954 lncRNA upstream 374631 14798973 ~ 14800142 (+) True G308018
TU364930 lncRNA upstream 394015 14699997 ~ 14780758 (+) True G307997
XR_003403804.2 lncRNA upstream 411599 14760831 ~ 14763174 (+) True LOC113537908
TU364909 lncRNA upstream 576161 14598393 ~ 14598612 (+) True G307976
TU364901 lncRNA upstream 585541 14589025 ~ 14589232 (+) True G307971
XR_003403808.2 lncRNA downstream 25479 15393609 ~ 15407641 (+) True LOC113537967
TU365380 lncRNA downstream 43969 15412099 ~ 15413822 (+) True G308404
TU365421 lncRNA downstream 388760 15756890 ~ 15799890 (+) False dag1
TU365710 lncRNA downstream 505875 15874005 ~ 15875206 (+) True G308707
TU365743 lncRNA downstream 625265 15993395 ~ 15994043 (+) True G308737
XM_034314027.1 mRNA upstream 48375 15064877 ~ 15126398 (+) True si:dkey-49n23.1
XM_034314025.1 mRNA upstream 48375 15064877 ~ 15126398 (+) False si:dkey-49n23.1
XM_034314026.1 mRNA upstream 48375 15064877 ~ 15126398 (+) False si:dkey-49n23.1
XM_034314012.1 mRNA upstream 112773 15045571 ~ 15062000 (+) True ssuh2.1
XM_026932414.2 mRNA downstream 7717 15375847 ~ 15382948 (+) True manf
XM_026932439.2 mRNA downstream 17164 15385294 ~ 15389128 (+) True rbm15b
XM_026932807.2 mRNA downstream 397892 15766022 ~ 15795427 (+) True dag1
XM_026932810.2 mRNA downstream 398521 15766651 ~ 15795427 (+) False dag1
XM_026932808.2 mRNA downstream 399619 15767749 ~ 15795427 (+) False dag1
TU364869 other upstream 653626 14514610 ~ 14521147 (+) False gpd1b
XR_004580240.1 other upstream 698388 14370788 ~ 14476385 (+) False asic1b
TU363207 other upstream 2712237 12457601 ~ 12462536 (+) True G306480
TU362774 other upstream 3658960 11515059 ~ 11515813 (+) True G306103
TU362623 other upstream 3693673 11480669 ~ 11481100 (+) True G305955
XR_004580181.1 other downstream 1121231 16489361 ~ 16501684 (+) False amigo3
XR_004580182.1 other downstream 1121231 16489361 ~ 16494139 (+) False amigo3
TU366607 other downstream 1892849 17260979 ~ 17263663 (+) True LOC113537865
TU367680 other downstream 3319267 18687397 ~ 18692014 (+) True snrpe
TU367679 other downstream 3319323 18687453 ~ 18692014 (+) False snrpe