RNA id: XM_034314027.1


Basic Information

Item Value
RNA id XM_034314027.1
length 4718
RNA type mRNA
GC content 0.45
exon number 19
gene id si:dkey-49n23.1
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 15064877 ~ 15126398 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTGGAAAAGAGACACGCGCGTCATCATCGGTCCTAACCGGCGCCTCAGAAAGCGGAATAATTACACAACTTATTCCTTAATTCAGCGAAGAAAACAAGACGAAACCCACAGTTTGCTTTACTTCCATCCATGAATCTTGCTGTGCTTGCTCATGACTTGCATCTGTGTAGGAGAAgCAGCAAAACAGTGATGTGAAAGAGGACACTTTCTGCATTGTTACGAGAAGAAACTGGAGATGTGGTGTGTGGGATTCTGGAGGATGGGGCACGTCTGTCCGCTGATGGCAATGCTGCTTCAGTTACTTCTGCCTGCCATTAGAGCTGACAGGGTCTGGAACCAGTACATACCACGACTGCAGCTCTCACATACAGAGCTGCGGTCAAGGAACAATTCAGCCATGTTCTGGCACAATGGTGCAGGGGTTAATGGGTATTACGAGGTTCTGCTGTTGGATGAGGATCGTGGCTGGCTGCTGGTTGGAGGAAGAGACCATGTCTACATGCTCGACTCTGAGAGCCTGACCCAGACTATACACAAGATTCATTGGCCAGCTGGAAGGGAACATACTGAACGCTGCAAACATGCAGGGAAGAATCTGTTGACCGACTGTGCCAATTTTGTGAGGCTCCTTCAACCATTCAACAAAACtcatgtgtatgcatgtggaACTGGAGCGTACCACCCTAAGTGTACATACATTGACCTGGGCCACAATGTCGAGGAACCTGAGCTTAGACTGCTGAACAATGCTGTCGAGTCCGGGAGAGGGAAATGTCCTTTTAGTCCACATGAGTCATTCACTGCTCGACTCACTGATGGAGACTTGTATGCAGGAACGTCAGTGGACTTCATGGGAAACAATGCAGCCATATTTCGTAGCTCTGTGCACACAACCAGTCAGCACTACATTCGCACTGAGGCTTATAATGACCACTGGCTCAATGAGCCAGAGTTTGTGGGCTCGTACTCCATCCCAGACACACATAGCCTAGACGATGACAAGGTCTATTTCTTCTTCAAGGAAACGGCTGTCGAGTCCAACCAGCTGGATAAGCGCATCTATAGCCGAGTGGCTAGAGTGTGCAAGAATGACATTGGTGGGAAGCGGAGTCTGATTAATCGCTGGAGTACCTTCCTAAAGGCCAGGCTGGTCTGCTCAGTGTCAGGGCCAGGAGGCATGGACACACACTTCGATGAGCTGGAGGATATATTTCTCTTGGAGACCAAAGAGCCACAAAATCCAGTGATATATGGAGTCTTCTCAACTTCGAGCTCTGTCTTCCGTGGCTCAGCCGTATGTGTCTACTCAATGGCGTCCATCCGAGCCGCGTTCAATGGGCCATTCGCCCACAAAGAAGGCCCTGACTACCGCTGGGTGGAATACAAAGGCAGGATCCCATATCCACGTCCAGGGACGTGCCCAAGTGAGACGTACGACCCGTTGCACAAGTCTACCCGTGACTTTCCCGACGAGGTTATGAGCTTCATGAGAGGCCACCAACTAATGTGGGAGCCAGTCATGCCAATTCACAGACGGCCACTGTTTACTCACATCAGTGCCCCCTACAGGCTGAAGAAGTTGGTAGTGGATAGAGTGGATGCAGAAGATGGCCAATACAATGTTCTGCATTTGGGTACAGATGACGGCAAGGTTCTGAAGGTGGTATCCATTCCCAAGGAGAACTGGGAATCTGAGGAAATAATACTGGAAGAGCTGAGTGTGTTTCAGAGTCCTATCTTAAGCATGGAGCTCTCCACCAAGAGGcaagcTCTATTTGTGAGCAGTGCAGATGCGGTGGCTCGGTTGCCCCTGCAACGATGTGAGCTCTATGGGAAGGCCTGTGCTGACTGCTGCCTGGCCCGGGATCCTTATTGCGCCTGGGACGGCACCACCTGCACCACTTATTTCCCAACTAACAAGAGACGTTCCCGCCGACAGGATGTGAGGTACGGCGACCCATGGAGCCAGTGTCAGGATCTGGGAGATGGTTCTGAGGAAATTGAGCTGAAGGTGGTTTATGGAGTAGAGAACAACTCAACCTTCCTGGAGTGCAGGCCTCCTTCACCACAAGCGACAGTCAAATGGATCATGCAGCAAAGACACAGCCAGAGCACTAAAGAGCTGCTCCCTGGTGAAGACATCATCCTCACAAAACGAGGTCTCCTCCTGCAGCAGATAACTTCCTCAAACGCTGGGCTCTACTTGTGCACAGCTCATGAGCACTCATTTTCTCGCACGCTAGCTCGCTACGAGCTGCACGTCATCTCTGAGCAGCATGTATCAAATACACGCAGCACTCATCACTCTGACCCCAAAGTGGGTGGCAACTATGCACCATCCTCGCTGAGCTACAAGGAGCTGCATCTGATCGGCGTTAGTGGTCTAACAGCAGATGAGTACTGCGAGCAGCTGTGGTACCGCGAGAAACGGAGACAGCAGAAACTGCGCACACTAAAGTGGAAGCAGACAGCCGAGAACCGCAAGGCTCGAGTTCGGCGGCAAAATCCACCGATCGAGCCACTCCACTGAAACCAGAGGAACAGACatttgagaaaaacaaaaagacatttgggtttgtcTTGGGAGAACAACATACCGTTCTAGAATTAGCCACATTAGCCTTGTTGCTGTTGATTACTAAAGGAATCCAGATTACAAAACCCCCAAAGAAATAAATGTTGGTGACCTATTGTTTAGAATTCTAAACAACATTCTCTTGTTAGGAAAAATTATCTTTTGGTATCACAAAAATGCATAGAATTATACATGAGTATATGAGGATATAATTAAGAGCAACTGAGCGAGAGGcaaagctgagaaaaaaaaacctttgaatGGTTAGATGAAAGATTTCATTACGAGTGagcataaacacatttttggcCAGAGATCTGTTCTGTCGCTGTGCCTTAAGCAATGCATTAATCAGcatcaggggtggacaaatcataaattcatttgcAAGCCCACTGGGTAAGGGAATGCATCAATGTGCTCACTCAGGACCATGTTGTGATTCCTGAAAATGCTGCACTTAATATCCCAATCAAATGtaaaagacataaagacatGCACTGAAGAAAAAAGTCAGATATTATCCTGAATCGATATCTTAGGAGCAGGGAATCAAGAAAAAGAATCAAATGTTCTGTTAGCTAGTCAAATTTAAATTCAAGAAATTTAACCCAAATGTGttgcagcctgggaaaacccttaaCATTGTGACATTTTGATGTTTTCTACCACATATATCTTTGTGAAAATTACAGGCTTATCTAATGACTTGTTCAAAGCCTggcattcactgtgtgagaaaatcaaACTTGGCTAGCGAAGTTTTAGACAACTGTTTTTGTCACCGCATTCATTAAACAGACTCCTTACCCAATGTGATCTTTGGACAAAGAAAGGCTAggcaagttttaaaaaaatcattttgatgGAATATTTTTTCATCAATGTTATAGACAGAAAAAACCCCAATGAGACACCAGACAGGTTTTCAGAGACCATCTCACATATATTATGAGCTATTAATACTGAAAGGGTAATATAAATGACTAATACAAATAGTTCATATTAACAGCTAGAAGACATCCTTGAACACATTGCTTGTCTATCAAGCAATTATGAATAGAAGAAAAATGATAGTCTTGACACAGCTatagtattaatttttttctttaagcattGTTTGATTTGTATTATTTCGTAGTGAATGGTTACACCATATGTTGTGGGCCAGACTGATGGTCGTGAGAATCACTGGAACATGTTGCAGTGCATTGTTAGTTCAGGATTTTTCAGAATGGTGTTCAATTGCACTTAATGAAATCCAGAAGAATGTGGTTCACTAATTACAGGGCTGGTTAGTAATATCTGTGCCTTCATCACAGCAAGTAGCATTGCCGCCCGCAGCTCCAAGTTTCCTAGTTGtattctgagctcaggttgctgtctgtgtggagtttgacACTGAAAATGTTCTCCTGTTGTCCTCCGGGTGGTCCAGTTTCCTCCCTTCTCACTTCACTTCCTGGCAAAACCtgtgaaactttaaaaaaaaggccacGGCTCTGGTTCCTAAGGGGCAGTGACATTGCTAATGGGCTAATTCTGAAGTAAATTAACAATCATCCAGGCTGCGTGAAACAAACTGTCATTCAAATATGAACCTGCTTCCTGTAGATTTAACATTTCCAAGATTCATATATCAGTATGTTATGAACTTTTGAAATACAGAATGTCTGATCTGACCAAAGCAAGAGTCTCTGGAGGAAGCTCTGTATACCTCTTAAGCACACCAGGATGTTCTTTTCTTGCCAGGAAAACCGTCTTTCCCATGAACAATCTTAAATAGGTCTCTGTTGTGTTTGTGGATACACTGAGCAGAAATTACATGTCATAAGAAACTGTGTAAGTCTTGCTAATACGGTTGTGGTACCAGTTAGCATGGTCTCATTTGAGCTCTGTTAGCCTTCATTCACCACTAGCAACATGTATCCTTTTCATGGTTAAGTAGTGTTTAGCCTCTCATACTGTAATGATCATTTACTGAACTGCGGTGTGCTGGAAGAGGCTCATTGTTCCATTTTGGGCCACACGCGTTGCACGGAAGGAACATCAAAGTATGGAAGCATCTGGGAGAAATGAGCATGAAGTATAGTggacagaatttaaaaaaaaaaaagccaatctGAGTTTTGTCTCTACTCA

Function

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU364954 lncRNA upstream 264735 14798973 ~ 14800142 (+) True G308018
TU364930 lncRNA upstream 284119 14699997 ~ 14780758 (+) True G307997
XR_003403804.2 lncRNA upstream 301703 14760831 ~ 14763174 (+) True LOC113537908
TU364909 lncRNA upstream 466265 14598393 ~ 14598612 (+) True G307976
TU364901 lncRNA upstream 475645 14589025 ~ 14589232 (+) True G307971
XR_003403808.2 lncRNA downstream 267211 15393609 ~ 15407641 (+) True LOC113537967
TU365380 lncRNA downstream 285701 15412099 ~ 15413822 (+) True G308404
TU365421 lncRNA downstream 630492 15756890 ~ 15799890 (+) False dag1
TU365710 lncRNA downstream 747607 15874005 ~ 15875206 (+) True G308707
TU365743 lncRNA downstream 866997 15993395 ~ 15994043 (+) True G308737
XM_034314013.1 mRNA upstream 2877 15045544 ~ 15062000 (+) False ssuh2.1
XM_034314012.1 mRNA upstream 2877 15045571 ~ 15062000 (+) True ssuh2.1
XM_026932530.2 mRNA upstream 2878 15045573 ~ 15061999 (+) False ssuh2.1
XM_026933007.2 mRNA upstream 24743 15029134 ~ 15040134 (+) True LOC113538136
XM_026932594.2 mRNA upstream 41203 15012865 ~ 15023674 (+) True cand2
XM_034314016.1 mRNA downstream 11953 15138351 ~ 15368130 (+) True dock3
XM_034314015.1 mRNA downstream 48375 15174773 ~ 15368130 (+) False dock3
XM_034314022.1 mRNA downstream 48375 15174773 ~ 15368130 (+) False dock3
XM_034314018.1 mRNA downstream 48375 15174773 ~ 15368130 (+) False dock3
XM_034314019.1 mRNA downstream 48375 15174773 ~ 15368130 (+) False dock3
TU364869 other upstream 543730 14514610 ~ 14521147 (+) False gpd1b
XR_004580240.1 other upstream 588492 14370788 ~ 14476385 (+) False asic1b
TU363207 other upstream 2602341 12457601 ~ 12462536 (+) True G306480
TU362774 other upstream 3549064 11515059 ~ 11515813 (+) True G306103
TU362623 other upstream 3583777 11480669 ~ 11481100 (+) True G305955
XR_004580181.1 other downstream 1362963 16489361 ~ 16501684 (+) False amigo3
XR_004580182.1 other downstream 1362963 16489361 ~ 16494139 (+) False amigo3
TU366607 other downstream 2134581 17260979 ~ 17263663 (+) True LOC113537865
TU367680 other downstream 3560999 18687397 ~ 18692014 (+) True snrpe
TU367679 other downstream 3561055 18687453 ~ 18692014 (+) False snrpe

Expression Profile