RNA id: XM_034314045.1


Basic Information

Item Value
RNA id XM_034314045.1
length 1531
RNA type mRNA
GC content 0.44
exon number 14
gene id nuf2
representative False

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 13617009 ~ 13628791 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGACAGAACCGCTGAAAGTTTAAATTTGACAACGGAAAAGCGGAAAAGGAGgagCCATGATGGAGAATACGTTTCCAATATACAAGGTGGACGCCATCGTGCAGTTTTTTCGAACTGAAGTCTTGACAGGACAAGAGGCGAAACATTTTGCAAAAAGTGATGTTACTCCTAATCCAAAGGCGGATGTCATCCAGAGACTGTACATGAGAATACTGCAGCTTGTGTATCGCTTCAGGCCTGAGTGCCATTACCTGGCACCTCTGTCAGAAAATCTCCAATACCCAATGTTACATGAGTGGTCCACACCAGTCTTGAGTCTCTATGTATGCATgtgCCAGTTTTTGCCAGTGTGCCATGTGTATGACTTTTCACTGAATGACCTGCTTAATCCTAAGCCCAAAAGAACAATCACTATTTTGAGTGGAATCCAAAATTTCCTGCACTTTAGGAAACAGAGGTTGGAAATAATTGCAGGCCATCAGCAGGCTTTTCGTGCAGATATGGATAAACTTCAGTATTGCACAAAAGGCATTAAGGAAGCTGAAAAGAAGATAGAGAAACTGATGACAATCCCACCAGAGCAGCAAGCAGAGGCTAAAGAACTGGCTGCAGCCCTCACAGAAGTGAAAAATGCTACCATGCAAGAAACCCAGGAAGTGAATGCCCTTAATGAACAGGTTGCAGAGTGCAAAAGAGAAATCGCAGAACGGTCACAGAAACTGAGCCAGAGGAAGCTAGATGTGGCCACTCACAAAGACGAAATAGCCAAACTTAAGTCTCAGATTGTTGAGTCTCCTGAGGAGCTCAAGAATGAGATGGAGAAGATGAAGGAGAGCATAAAGAATATCAAGATCTCAAAAGAGCTGGCAGATGAGACGCTGGTGGAGCTGCAGATTAAGGTGCAGTGTGCTAGCCAAGGAGAAGCAGAGATTCAAGTAATACTGAAACAGCTGCATGACCTGCAGGCCAGCATGTGCAAGACTAACCAACAGAAGGAAGAGGTCCAGAATCTGGTGGCTCTCTACGAGTCCCTGCAGAAGGAGCTAAAGGGCCTGAGCAATGAAGAGGGCCAGCTAAAGAGAGGTCTCGCCATGAAACAAGACAAACAGTCCAAGCAGCAGATTCGTCATCAGAAAAAGAAGGAGCTCAAGGACCAGCATGTCCAAAATATACTTGGGCAATATGACAAAGTTCATGAAAAACGTGAGGAAATCGTGGATCGGATAAAAACCATCACCCGAGAGACCACGCAGTTCAAGGCAAAAATGCAGAAGCTCCGAGATACCTGCAACCAGAACAGTGAAAAAGCTCAGgCCATCTACGACCGGCTGCTCACCACACTGGAGCAGTACCACAAACGTCTTGAAAATCTAGTGATGGAGGGCAGTGCTGACATCATGAAGATGAAAACTAATTTCTAAACCACTTTTGGCAAATGGTCTTTTGTCTCTGTACCTTTTTCAAATGTTTGTCATATgtaaatttttgtcttttgccaggaataaaattaaataaactgtcACTTTTGGTA

Function

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0000777 condensed chromosome kinetochore cellular_component
GO:0031262 Ndc80 complex cellular_component
GO:0005634 nucleus cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU363977 lncRNA upstream 92992 13522009 ~ 13524054 (+) True G307161
TU363969 lncRNA upstream 115215 13501466 ~ 13501831 (+) True G307154
TU363884 lncRNA upstream 266366 13350453 ~ 13350680 (+) True G307079
TU363757 lncRNA upstream 282801 13331687 ~ 13334245 (+) True G306959
TU364036 lncRNA downstream 62315 13691106 ~ 13692912 (+) False ippk
XR_004580226.1 lncRNA downstream 311635 13940426 ~ 13960190 (+) True LOC117599900
TU364104 lncRNA downstream 374817 14003608 ~ 14003831 (+) True G307272
TU364094 lncRNA downstream 386371 14015162 ~ 14016394 (+) True G307262
TU364127 lncRNA downstream 423044 14051835 ~ 14058202 (+) True G307293
XM_026932421.2 mRNA upstream 10595 13589033 ~ 13606451 (+) True zgc:77375
XM_026932508.2 mRNA upstream 30075 13579360 ~ 13586971 (+) True isy1
XM_026932623.2 mRNA upstream 38687 13569089 ~ 13578359 (+) True LOC113537916
XM_034314274.1 mRNA upstream 48085 13565243 ~ 13568961 (+) True cnbpb
XM_026932624.2 mRNA upstream 48093 13565069 ~ 13568953 (+) False cnbpb
XM_026932513.2 mRNA downstream 3314 13632105 ~ 13649265 (+) True si:dkey-42i9.6
XM_026932764.2 mRNA downstream 40629 13669420 ~ 13671305 (+) True si:dkey-42i9.4
XM_026932899.2 mRNA downstream 45563 13674354 ~ 13691624 (+) True ippk
XM_026932582.2 mRNA downstream 76930 13705721 ~ 13721720 (+) False ecm2
XM_026932581.2 mRNA downstream 76931 13705722 ~ 13721720 (+) True ecm2
TU363207 other upstream 1154510 12457601 ~ 12462536 (+) True G306480
TU362774 other upstream 2101233 11515059 ~ 11515813 (+) True G306103
TU362623 other upstream 2135946 11480669 ~ 11481100 (+) True G305955
TU362537 other upstream 2290686 11325604 ~ 11326360 (+) True G305869
TU362531 other upstream 2301610 11314184 ~ 11315436 (+) True G305863
XR_004580240.1 other downstream 741997 14370788 ~ 14476385 (+) False asic1b
TU364869 other downstream 885819 14514610 ~ 14521147 (+) False gpd1b
XR_004580181.1 other downstream 2860570 16489361 ~ 16501684 (+) False amigo3
XR_004580182.1 other downstream 2860570 16489361 ~ 16494139 (+) False amigo3
TU366607 other downstream 3632188 17260979 ~ 17263663 (+) True LOC113537865

Expression Profile