RNA id: XM_034314142.1


Basic Information

Item Value
RNA id XM_034314142.1
length 4568
RNA type mRNA
GC content 0.57
exon number 22
gene id per3
representative False

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 19787821 ~ 19809321 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGCCTCGAGTGGCCGGGCTCACGTTGCAGTAATGCGTGTGCGTCTGGGCGAAAACTAAAACgagaaacaataacacagaaACCGAGAAGTTGTGCGCGTGGAGCGTCAACCGAGCCCGGGTTTATGGATCGTAACCGGGAGTCTGACGACTATTTGTTTCACTTTTGGGAGTTTTAACGGCGGGGAAAAATCCAGAAATCCAGAGACAGCAAATGCGTGGTCTCATTAGCTGCAACTTTACATCCGCACACGTTGTTCTGCGCGCGAGGCATCTCAAGCCTGTTTACTCACACTAAGGACTAAACGAGGGTCCCATCCTCAGGGCTTAAAGATGGATTTCTCCATAGAATAACAGTGTTGACTGGTCCAGCGACAAGAACAAACCCAAACAGCCACCAAGTGACCATTCGGTTGCGTGACCAACCAGAGCATGCCGAGTGGAGACAGCTACCAGGATGGAGAAGAGAACGGTTCTCCTGATCCGAGCGGCGTGGAGCGAGGCGTTCCAGTGGAGCGGGCCAACAGGGAGGCAGAACCAGCAGGCAGGGGGGGAATGGCGTCCGGATCCGGATCGGGTTCAGGAGAGGACGAGGAGGTGGACGAGCAGGCAGAGGGACGGCGCGTGGCTGAGGAGAGCCGCGGAGAACCTTCCGGAGTAGAGCAAGGTCAGGAGGACGTGGAGATGAACGGCGGTCACGACAGCATCGGGGGAACACGACGGCATTCGTCTTCTGCCAATGGGAGTCCAGGCAGCACCACGGGATCAGGCAGCACCAAGAGCTCGAAGTCTGTGACGGGCTCGTCATCCTGCAGCCTCCACAGCACGGCCTGCAGTCAGAGCAGACACCACGCAGACTGCAGcgagCAAGCAGAGCAGGGCCGAGACCACTCCCACCGGGAGATGATGCAGACGGTGCAGGAGATGAAGAAGAGGCTGCCGTCGGAGAAGAGGAGCCGCAGCAAACCCAGCACTGTGGAGGCTCTGAACTACGCCCTTAACTGTGTCAAACAAGtacaagCAAACAGCGAGTACTACAAGTTACTGATGTGCAACGGACTGGAGGAGAGAAAAGACGCTACGGTGTGCAGCCTGGAGCAGCTGGAGAGCATCACGTCCGAACACACGCTCAAAAATACAGACACGTTCGTGGTGGTGTTCTCGCTGGCTACGGGCCGAGTGGTGTACGCGTCGGAGCAGGCCTCCAGCATCCTCAACTGCAAGCGCAAGTTCCTCGACTCGGCCAAGTTTGTAGAGCTGCTGTTTCACCAAGACGTCAACGTGTTTTACTCTCACACCGCACAGCCGCACCTGCCGCCCTGGAACGTGGGGACAGACAGCGCTGCAGTCCTTTTTGAATGTGCCCAAGTCAAGTCCTTCTTCTGCAGAATCAGAGGAGGGAAGGACCGCGATGGTGAGATGCGCTACAACCCGTTTCGTATCACGCCGTACCTGCTGAAAGTGCAGGGCATGGGCGGGGAGGAGGAACATCCGTGCTGCTTGGCTCTGGCTGAACGCATCATCTCAGGATACGAGGCTCCCCGGATTCCCACAGACAAGCGCATCTTCACTACAACACACTCTCCAGGGTGTGTGTTCTTAGAAGTAGATGACCGtgCTGTGCCTTTGCTTGGCTACCTCCCTCAGGACCTGATAGGCACGTCGGTGTTGACCTGCCTCCACCCTGAGGACCGCACCCTCATGCTGGCCATGCATCGAAAAATTCTGAAATACGCAGGCCAGCCGCCGTTTGAACATTCCCCAATCCGCTTCCGCTGTCAAAACGGAGACTATGTCACACTGGACACCAGCTGGTCCAGCTTTGTCAACCCCTGGAGCCGCAAGGTGGCCTTCATCATCGGCAGGCACAAAGTCCGCACaggGCCTCTGAACGAGGATGTGTTTGCTGCACAGAGCAAAGCAGAGCTTCCTGTTATGAATGAAGATGTCAAAGAATTGCAGGCCATGATCTAcaagcttttcctgcagCCGGTCCACAATAACGGCTCGAGTGGTTACGGCAGCCTGGGCAGTAACGGTTCCCACGAGCACTACATCAGCGTGGCCTCATCCAGCGACAGCAACGGGAACCTGTGGGAAGATTCGCACCGAGAGCCGgttaCCCTCCAGCAGATATGTGCTAATGTTAATAAAGTGAAGAGAGGAGGTCAGCAGGCGTATCTGGACTCCCGGAGAAAAGTCATGGCGGAGGGGAAAGTTAGCACAGAAACTCCAGCTCCCATCCTTCAGGGTGGTCAGCGTTTAGAGATTCAGCGTCTCCGAAGGTCCCTTGAGGACTCACACAGGAAGCAGCCGCACATTCCGTCTTACCAGCAGATTAACTGTGTGGACAGCATCATTAGGTACTTGGAGAGCTGCAGTGGCCCTGCCCTGAAGCGGAAAAGCGAATCCTTATCCATCGCtacctcttcttcttctaccACATCCGAGGAAGACAAGACCCCCGCGGCCCCACTGGAGGACAGAACTAATGCTGATGAGGCAACCATGGAAGCAAGTGCTGGTCTGGAGAGCCAGGTGTCAGCCGGATCTGCGGTGACTGTGGCACATACGACGGCCGCCGTGGTTGGGGCTCCGCTACCTGACATCACTCTGTCCACTAAAGCTATGAGCGTGGTGTCGGTGACCAGCCAGTGCAGCTACAGCAGCACCATCGTGCACGTTCCCCAGCCTGAATCTGAAGTGACGGCTCTAGAGGACGCGCCAATGGGAAGCGAACCAGCCGACCCAGCTCCTGCGCCATCGCGGCCGGCCCCCACCTCCTCCACCACGGCTCCAGAGGAGTTCCAAGTGGTGGGGCTGACCAAGGAGGTGCTgtccgcacacacacagaaagaggagCAGGAGTACGTGGACCGATTCAGACATCGCATCCTGGAGAGCCCATATAGCTCCTACCTCCAACAGGACAACAGCAGCATGGCTCACTCCAACCACAGAGGTGATTATGCCATGAGGCCTCTGAGCACGAGAGATTGGAACAGATCCCACTCAGGCAAACCCAGACACAAGCGTGCAAAGCCTCAGGCCTCGTCCGACAGTGACGGCTCACGGCCTGGACACTTCCTGCCGATGACCTCATCTGCTCCCAATAACTCCTCGTCCGAATCTTCCCAACCCAAACCCAACTTTTTCTCACCCATGCTGATGCCTGTTCAGCCCCCGTACTACCCCGTCCCACCTCAACCCACTGTCATGCAGCCACATGGCGTTCCTATGGTGGTGCAGCCCGAACAGACGCAGCCGGTCATGCAGGTCATGAATCCTTTCATGTCCCCTGTCATGGCTGTCATCATGCCCTACCCCGCAAATTACACCATCTATCCCCAGGCAGTACCAGGCATGCCAGGTGTACCAGGTGTACAAAGTGTAACTCAACCTGGATTAGTGCCTCCTTCCTATCCCCATCCTTCCTTCATGTCCCTGGTGGACAATCCACCTGCTCAGAGTGGCCCCAGCTCAATGCCCCCAGCCCCTGGAGCGTTGCTGTCTTCACCGATCTCGTCTCCGTGGCCGGAAGAGGATGTGGATGGCGCTCAGCCCACAGTGCTGTTCTCCAGTTCCAGGTCCAGCAGTCCGCTACAGCTCAACCTGCTGCAGGAGGAGCTGCCCAAACCGATCGCCCCGCAGAGCAACACGGGCCGAGCCGAAAGCCTGCACGAGCAGCACGCCAAGGAGGATTCTCCCAGCGATTCGGGTAATCAGGACGCTCAGTCCACCTCCAGTGTACTGCTGGACCTGCTGCTGCACGAGGACGCTCGCTCCGGAACCGGCTCCAATGCCTCTGGTAGTGGATCTGGAGAATCCGGGGGTTCTCTGGGTTCGGGTTCAGGCCTGGGCTCCAATGGTACCTCTACCAGCCACACAGgcagcagcaacagcagcaagtaCTTCGCCAGCAATGACTCCTCAGACACGTCCCATAAGGCCAGAAAGAGCCAGGATGCACCAGAGCGTTCCAGCTTCGACAAGTGTGTGGAGGACTCGCTGTGGACCATGATTCAGCACACACCAGAGCCAGTCATGATGACCTATCAGATCCATCCCAGGGGAAAGAATTTAGCGTGGCCAGTCACACTCGCCGAGGTAGTTCTCGCCAAGGTAGTTGTCTCATTGCACTGTCCACCCTGTTTCCCCTGAGGTAGGTGAATCCAGGTGACGGTCTACAATGAGACCACTGCTAATCAGCTGGCTGAGGTGACTTAACACACGTAGCGCAGTTTGTGGATGGAGAAGTAGACTGACCGAGGCTGAAGCTCACTGAGCACCTTCCTATTCTGACTCTCTAAATTGGAAGTCGAATCTCACTAGTTGCCTTATGCAGAcaaaaagcgtgtgtgtgtctgtatgcgtaagggtgtgtgtgcaagtgtttgtgtgtccatGGGCATTATTTTATGTGTTAATGCCTGTGTACAGGGACCAGGCACAGGTTCTGAAGGAGGACCGGGAGAAGCTGCTCCTCCTGCAGCCCATGCAGCCGTGGTTCACTCAGGAGCAGAAGGAGGAGCTGGCCGAGGTGCATTCCTGGATCCACCATCACAGTGTA

Function

GO:

id name namespace
GO:0032922 circadian regulation of gene expression biological_process
GO:0009648 photoperiodism biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU368205 lncRNA upstream 70492 19717081 ~ 19717329 (+) True G310870
TU368163 lncRNA upstream 226431 19561183 ~ 19561390 (+) True G310828
TU368130 lncRNA upstream 289150 19494850 ~ 19498671 (+) False svbp
TU368131 lncRNA upstream 289150 19494850 ~ 19498671 (+) True svbp
TU368005 lncRNA upstream 674794 19110129 ~ 19113027 (+) False G310703
TU368221 lncRNA downstream 4226 19811438 ~ 19811735 (+) True G310882
TU368219 lncRNA downstream 28467 19835679 ~ 19836564 (+) True G310880
XR_004580176.1 lncRNA downstream 32209 19839421 ~ 19848284 (+) True LOC117599874
XR_004580177.1 lncRNA downstream 32209 19839421 ~ 19845547 (+) False LOC117599874
TU368220 lncRNA downstream 41255 19848467 ~ 19855283 (+) False si:dkey-264d12.5
XM_026932940.2 mRNA upstream 3896 19768983 ~ 19783925 (+) True vamp3
XM_034314134.1 mRNA upstream 25569 19535418 ~ 19762252 (+) False LOC113538092
XM_026933004.2 mRNA downstream 8694 19815906 ~ 19834429 (+) True si:dkey-264d12.1
XM_026932462.2 mRNA downstream 46236 19853448 ~ 19868481 (+) False si:dkey-264d12.5
XM_026932461.2 mRNA downstream 49852 19857064 ~ 19868481 (+) True si:dkey-264d12.5
XM_026932463.2 mRNA downstream 49852 19857064 ~ 19868481 (+) False si:dkey-264d12.5
XM_034313999.1 mRNA downstream 76614 19883826 ~ 19894420 (+) True si:ch211-193i15.1
TU368156 other upstream 3908 19768990 ~ 19783913 (+) False vamp3
TU368157 other upstream 3908 19768990 ~ 19783913 (+) False vamp3
TU368136 other upstream 270662 19508255 ~ 19517159 (+) False phf13
TU367971 other upstream 700015 19087025 ~ 19087806 (+) True G310681
TU367680 other upstream 1095807 18687397 ~ 18692014 (+) True snrpe
XR_004580241.1 other downstream 1063440 20870652 ~ 20882365 (+) False hnrnpa1a

Expression Profile