RNA id: XM_034314190.1


Basic Information

Item Value
RNA id XM_034314190.1
length 4289
RNA type mRNA
GC content 0.47
exon number 38
gene id cacna2d3
representative False

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 1760864 ~ 1812936 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACAAAAGTGTTTCAGGTTTAAGGTAGCTGCAGAAGGGGCTGCTGAAAACAATAGACCTTTAAGTTAAACTGTGGGCTTCAGCATTCGGTGGTGAAATCAAATCCATCGCCACTAAATACTCCGGTTCACAACTACTGCAGAAGAAATGTAAGGAGTATGAGCGCACAATTCGGATGGAGGAGGCTGACGGAGCCAAGCTGGTGCAGAGCATCTCTGAGAAAATGGCTGAAATGTTCCGCAGCAAAGCGCAAGCTGCACGGAGGCTGGTGGAGGCGGCGGAGGAGGCGCACTTACAGCATGAGGAGAACCCCGACCTGCAGtacgAGTACTTTAATGCTGTCCTGATAAACGAAGTGGATGAGGATGGGAACAGCGTGGAGTTGGGAGGAGAATTTATCCTGGAGCCAAACGATCACTTTAACAACCTGTCAGTTAACCTGAGTCTGAGCGTGGTGCAGGTCCCCACCAACATGTACAACAAAGATCCTGATATAGTAAACGGTGTGTACTGGTCTGAGGCTCTGAATAAAGTGTTTGTGGATAACTTCGAGAAGGACCCCTCACTCATCTGGCAGTATTTTGGAAGTGCTAAAGGTTTTTTCAGACAATACCCAGGTGTGAAATGGCATCCTGATGAACACGGAGTCATCTCATTCGACTGCCGCAACAGAAAATGgtACATCCAGGCAGCCACGTCTCCGAAGGACGTGGTGATTCTGGTGGACGTGAGTGGCAGTATGAAGGGTCTGCGGCTCACCATCGCCCGGCAGACCGTCTCCTCCATCCTGGACACGCTGGGAGACGACGACTTCTTCAACATCATCGCTTACAATCAGGAGATTCATTACGTGGAACCGTGTCTGAATGGAACTCTGGTGCAGGCCGACAAAACCAATAAAGATCATTTCCAAGCTCATCTGGACCGGCTGTTTGCGAAAGGCATCGGGCTGCTGGGAGACGCTCTGACTGAAGCTTTCACGGTTCTCAATGAGtttaacCAAGCAGGCCGTGGAAGTGTGTGCAGTCGGGCCATCATGCTGGTGACGGATGGAGCCACCGAAATGTATGACGATGTTTTTGCCAAGTACAACTGGCCCGAGCGGAAGGTGCGCATTTTCCCCTATCTGATTGGACGAGAGTCAGCCTTCGCAGATAACCTTAAATGGATGGCATGCGCTAAcaaaggcTATTTCAGTCAGATCTCCACCCTGGCTGACGTTCAGGAGAACGTTATAAGATATCTGCACGTCATGAGCCGCCCAAAAGTCATCGACCACGAGCACGACACGGTGTGGACTGAGGCCTACGTGGACCAAGCTCTCGCTCAGGCTCATAAgcttTCTGCACGCAACGGACCAAATCCCATGACCACGGTGGCCATGCCTGTCTTCAGCACCAAGAatgagacgAAAAATCAAGGCATCCTCCTGGGTGTAGTGGGAATAGACATTCCCATTCAGGACCTGATGAAGACTGTCCCGAAACACAAGCTGGGAATTCACGGTTATGCGTTTGCTGTTACCAATAATGGCTACATCCTCATGCATCCAGACCTCCGACATCTGtaccAGGACGATCAGAAGAGACGGAAGGCCCATTACAGCAGTGTTGACCTGTCTGAGGTGGAGTGGGAAGACACTGACAATTAtCTCAGGAACgccatggtgaacagaaaaacaGGCACCTTCTCCATGGAGGTAAAGAGGACGGTGGATAGAGGGAAACGTGTTCTGTCAATGCACAATGATTACTACTTCACCGACATCAGCGGAACTCCATACAGtGTTGGAGTGGCTTTGTCTCGAGGGCATGGAAAACACTTCTTTAAGGGAAATGTTTCACTGGAAACGGGTCTGCGTGATCTGGATCAGCCGGGTGTGGCTCTGGCAGATGAATGGACGTACTGCAACACCGACGAGCATCACGAGCATCGCTACCTGACGCAGGTTCAGGCCATCAAACTCTACCTGACCGGCCGCAAACCGCACCTCAAGTGTGACAGGGAGCTGATCCAGCAGGTTCTGTTCGACGCCGTGATCACCGCTCCACTCAAGGCCTACTGGACCGGCCTCGCTCTCAACAAGTCAGAGAATCCTGATAAAGGAGTGGAGATTGCTTTCCTCGGCACTCGTACTGGTCTCTCCAGAACCAACCTGTTTGTCGTCCCGGATcaactgaccaatcaggATCTGCTGAGGGCAGAGGATAAGGAGGGCATCTTTAACGCGGATCATTTTcccctgtggtataagagagcGGCTGAGCAAGTTCCTGGCACCTTCGTCTACTCCATTCCCTTTAGTGCagCACAGGATAATAAGAGTGTGGTGTTAGCCAGCACTGCTATCCAGCTCCTGGATGAGAGGAAGTCTCCTATAGTGGCTGCTGTCGGGATTCAAATGAAACTGGAATTCTTTCAGAGGAAGTTTTGGACAGCCAGCCGACAGTGTAACGCTCTGGATGGGAAATGCAGCATCAGCTGTGACAATGAgGATATTAAATGTTACCTCATTGATAACAACGGCTTCGTTCTGGTGTCTGAGGATTATTCTCAGACGGGGCTCTTCTTCGGAGAGGTGGAGGGAGCCGTCATGAACAAACTGCTCCTCATGGGTTCTTTTAAAAGgatCACGCTGTATGATTATCAGGCTCTGTGTAAGGAGTACGTAGGCAGCAGTGACAGCGCACGCACTTTACTGAACCCGTTCTCTGCTGTGAAGTGGCTCATCAGTGAAATTATCCTattcCTGCTAGAGTTTAACTTCTACAGCTGGTGGAGTTGGGACTCGACTGTAAAAGctgacAGAGTGAACAGAAGGGCGATGCTGGTGCCGTGTGATATGGAGTATCCAGTGTTTGTCTCAGAGCGGACAATCAAAGAGACGGCCGGCAGCATCGACTGCGACGGCTGtatcaggacgTTTGTCATTCAGCAGATCCCCAGCAGTAACCTCTTTATGGTTGTTGTGGAGAACAAGTGTGACTGTAGCTCCACCCCTCCAGTTACCATGGAGCCAATCGAGATCTTCTACAACGAAACTCTTAAGTGTGAGACACTGAAGTTTCAGAAGGACCGCAAACGTCCTGACTCCTGTCACCCCTTTCATCCTGaggaaaacGCCATGGAGTGCGGCTCAGCCATGACCCTTTCTCCCACGCTAGCTGCCGCTTTGATTCCCCTCCTGATCTTCCTCATTTCCAGGTGACCTTTGACGTGACCTTCAACCTTCCAGCCATGGGAGGGATCGTCCTCACTAATGGCTAATGCTAATCgggtgcaaaaacaaaaataacagttCAAATGCAGCTTGCTGACAGAATCAAACTCATCCTTATGACCTCAAAATGAAACCTGCTGACACTTTAGAGGCTCAGTGACCTTTATATGACCTTTAAGAATGTCCAAATGTAAAGGGAGTGATCGGAAATGACGTGACCCAAACGCCAGAAGGGTCTTTTTTAGAATTCATTCTAATGAGTTATTGAGAAAACTCCAGTTTGTATGGTGTATATAGATGTTGCTTGACAAagtagacattaaaaaaaattgtgctgtggcagccattttgtagctagctagcagccTGCTGGCAAATTAGTGGCTAATTAGCAGCTAAAAGCATTTCACTCTACTTCTGAGCTAAAGTGTGGCACAGGGACGCTAAACATGACTAACTTTCTGCTTTATTACATGACACAGTTATCTGAATGTTATATTTGTAACCAACTTGATGTAAACTGCTTCTGAACGTTAAATCTAACGTAGCAGTAATAGACACAGCCGAGTAACACCATACAAAtgctcaaaaataaaacaacgaCAGCTAAGACGTCTTATTAGGATGAATTCTGTGCACCCTTTGGTTTGagataagaataaaaaatatgtagaTGTGAATTTAAGCGTTTGGGACACGACCACGTTGAGGATGTTGTTCTTAATCTGAGCCATGAGTCCCGCGTCATGCGGGAGACAAGCGTGCTTATAATAAATCACTGCTTTTTGTAAATTCATCCAAAATTcaaaacattattgtttatgGGCAACTGAGAAAAattgtttctttgttaattatATTCCCATTCGTCTGCCTGTCATTTTTTACAcgctttaatttcattaaacGAAATAAACATGCATGTAGCGAGAAAACATATGGAATATTCTCCAGaaaaatgctgatttttaaaaattctgaatTGCACAAGAATGCCTgcttaacaaacaaacaaaaaaaaaaacaaagaaaataaaataaaatgtcttttaaatgattaaactatacct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU355461 lncRNA upstream 123031 1626093 ~ 1640428 (+) True G299916
TU355401 lncRNA upstream 140875 1620800 ~ 1622584 (+) True G299862
XR_004580234.1 lncRNA upstream 158873 1600693 ~ 1604586 (+) True LOC117599906
TU355388 lncRNA upstream 268814 1486450 ~ 1494645 (+) False erc2
TU355383 lncRNA upstream 326202 1408502 ~ 1437257 (+) True G299851
TU356239 lncRNA downstream 7685 1820621 ~ 1822339 (+) True G300447
TU356266 lncRNA downstream 41765 1854701 ~ 1857401 (+) True G300467
TU356290 lncRNA downstream 107591 1920527 ~ 1924467 (+) True G300479
TU356299 lncRNA downstream 130490 1943426 ~ 1944198 (+) True G300487
XR_003403969.2 lncRNA downstream 194674 2007610 ~ 2021578 (+) True LOC113539753
XM_026935293.2 mRNA upstream 11165 1660208 ~ 1752294 (+) False cacna1da
XM_026935298.2 mRNA downstream 65667 1878603 ~ 1920454 (+) True slc38a3a
XM_026935300.2 mRNA downstream 65669 1878605 ~ 1920454 (+) False slc38a3a
XM_034314389.1 mRNA downstream 76375 1889311 ~ 1920454 (+) False slc38a3a
XM_034313997.1 mRNA downstream 113241 1926177 ~ 1977132 (+) True gnai2a
XM_026935221.2 mRNA downstream 181277 1994213 ~ 1998435 (+) False inka1a
TU355411 other upstream 264972 1496860 ~ 1498487 (+) False LOC117599925
TU355413 other upstream 265832 1496860 ~ 1497627 (+) False LOC117599925
TU355179 other upstream 898571 863338 ~ 864888 (+) False fbxo42
TU355161 other upstream 918648 842980 ~ 844811 (+) False LOC113539702
XR_004580271.1 other upstream 1242572 518567 ~ 520887 (+) False cdkn1a
TU358141 other downstream 2654141 4467077 ~ 4469174 (+) False LOC113539599
XR_003403967.2 other downstream 4851138 6664074 ~ 6779358 (+) False cpne5b
XR_004580199.1 other downstream 6688702 8501638 ~ 8558911 (+) False nfasca
XR_004580200.1 other downstream 6688702 8501638 ~ 8558788 (+) False nfasca
TU362120 other downstream 8699735 10512671 ~ 10513270 (+) True G305515

Expression Profile