RNA id: XM_034314216.1


Basic Information

Item Value
RNA id XM_034314216.1
length 5980
RNA type mRNA
GC content 0.49
exon number 40
gene id LOC117599896
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 1139608 ~ 1150910 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TATCCAACACGTGCCAGTCCTGTTCTGCCTTTAATTTCTATATTAGTAATCAGCTAAGAAACTTGCCACCATGGGGGATGGAGAAATGGAGTGTTTCGGCAAGGCGGCCATCTACCTCCGGAAGCCGGAAAGGGAGAGGATTGAGGCTCAGAACAGACCTTTTGATGCCAAAACTGCAGTATATGTGACCGATGCCGCTGAAATGTACGTCAAAGGTACACTGAAGAGTAAAGAAGGTGGCAAAGCCACTGTCGAGACTCTGGATGGAAAAAGTGTCACAGTCAAGGAAGATGAAGTCCATCCTATGAATCCTCCAAAGTTTGACAAAATTGAAGACATGGCCATGATGACCCACCTCAATGAACCTGCTGTGCTGTTTAACCTCAAAGAGCGTTACGCAGCATGGATGATCTATACCTACTCAGGGTTGTTCTGCGTCACTGTGAACCCCTACAAGTGGCTCCCAGTGTACGACGCAGTAGTTGTGGCTGGGTACAGAGGCAAAAAGAGGATTGAAGCCCCACCTCACATCTTCTCCATCTCTGATAACGCCTATCAGTTCATGCTCACTGATCGCGAAAACCAGTCTGTCCTGATTACTGGAGAATCTGGTGCAGGAAAGACTGTGAACACAAAACGTGTCATTCAGTACTTTGCGATGGTTGGCATGTCTTCAGGGAAGAAGGCAGAGCCTACACCTGGCAAAATGCAGGGGTCACTGGAAGACCAAATTGTTGCAGCCAACCCCCTGCTGGAAGCTTACGGTAATGCCAAGACCGTGAGGAATGACAACTCCTCTCGTTTTGGTAAATTCATCAGAATTCATTTTGGGCAAACTGGCAAGCTGGCCTCAGCTGATATTGAAACCTatcTGCTGGAAAAGTCAAGAGTCACTTTCCAGCTGTCTGCTGAGAGAAGCTACCACATTTTCTACCAGCTCATGACTGGACACAAGCCAGAGCTGCTTGAGGCACTGCTCATCACCACCAACCCCTATGACTACCCTATGATCAGCCAGGGTGAAATCACAGTCAAGAGCATCAACGATGTGGAGGAGTTTATTGCCACAGATACGGCCATCGACATCCTCGGCTTCACCGCTGATGAGAAAATTAACATCTACAAGCTGACCGGTGCTGTGATGCATCATGGCAACATGAAGTTCAAGCAGAAGCAGAGGGAGGAGCAGGCTGAGCCTGATGGCACTGAggTGGCCGATAAAATCGCCTACCTTCTGGGCCTGAACTCAGCTGACATGCTGAAAGCTTTGTGCTACCCCAGAGTCAAGGTCGGAAACGAGTTTGTGACCAAAGGCCAGACTGTACCTCAGGTGAACAACTCTGTCATGGCCCTTTGCAAGTCCATCTATGAGAAAATGTTCTTGTGGATGGTCATCCGTATCAATGAGATGTTGGACACAAAGCAACAAAGACAGTTCTTCATTGGTGTGCTGGACATCGCTGGATTTGAGATCTTTGATTTCAACAGCTTGGAGCAGCTCTGCATTAACTTCACAAATGAGAAACTGCAACAGTTTTTCAACCACCACATGTTCGTGCTGGAACAAGAGGAGTACAAGAAAGAAGGTATTGAGTGGGAGTTCATTGACTTTGGTATGGACTTGGCTACCTGCATTGAGCTTATTGAGAAGCCAATGGGCATCTTCTCCATCCTTGAAGAGGAGTGCATGTTCCCCAAGGCTACAGACATGACCTTCAAGAACAAGCTTCATGACCAGCATCTTGGAAAATGTGCCTGCTTCCAGAAGCCAAAGCCTGCCAAAGGCAAAGCTGAGGCTCACTTCTCCCTGGTGCACTACGCCGGCACTGTGGACTACAACATTAGTGGATGGTTGGACAAGAACAAGGACCCACTGAACGACTCTGTTGTGCAGCTGTACCAGAAGGCAGCAAATAAACTGTTGTCCCACCTTTATTTAGCCCATGCCTCTGCTGAGGCTGAAAGTGGTGGAAAGAAAGGCAAGAAGAAGGGTGGTTCCTTCCAGACTGTCTCTGCTCTGTTCAGGGAGAACTTGGGCAAGCTGATGACCAACTTGAGGAGCACCCACCCTCACTTTGTGCGTTGCTTGATTCCAAATGAGTCCAAGACTCCAGGTCTGATGGAGAACTACCTGGTCATCCACCAGTTGAGGTGTAATGGTGTGCTGGAGGGTATCAGAATCTGCAGAAAGGGATTCCCCAGCAGAATCCTCTATGGTGACTTCAAGCAGAGGTATAAAGTCTTGAATGCCAGTGTCATCCCAGAAGGCCAATTCATTGACAACAAGAAAGCTTCAGAGAAACTCTTGGGCTCTATTGATGTCGACCACACCCAGTATAAGTTTGGACACACCAAGGTGTTCTTCAAAGCCGGTCTGCTGGGTACCCTTGAGGAGATGCGAGATGAAAAGCTAGCAAATCTGGTGACCATGACTCAGGCTTTGTGCCGTGGCTACCTCATGCGGAGGGAGTTTGTCAAAATGATGGAGAGGAGGGAATCCATCTATTCCATCCAATATAACATCCGCTCATTCATGAATGTGAAACACTGGCCATGGATGAAGCTGTACTTCAAGATCAAGCCTCTTCTCAAGAGTGCAGAGACTGAGAAGGAAATGGCTGCCATGAAGGAGAACTTTGAGAAAATGAAGGAGGACTTGGCAAAGGCACTGGCCAGAAAGAAAGAGCTTGAGGAGAAGATGGTGTCTCTGCTACAGGAGAAAAATGACCTGCAACTGCAAGTAACAGCTGAAACAGAAAACCTTGCTGATGCCGAGGAAAGGTGTGAGGGGCTCATCAAGAGCAAGATCCAGCTTGAAGCTAAACTCAAAGagtcaaatgaaagactggaggatgaggaggaaatCAATGCTGAGCTGACTGCAAAgaagaggaaactggaggatgAGTGCTCTGAGCTGAAGAAGGACATTGATGATTTGGAGCTCACCTTGGCCAAAGTGGAAAAGGAGAAACATGCCACTGagaacaagGTCAAGAACCTCACCGAGGAGATGGCATCTCTAGATGAGAGCATTGCCAAGCTCACTAAGGAGAAGAAAGCCCTCCAAGAGGCACACCAGCAGACTCTGGATGATCTCCAGGCAGAGGAAGACAAAGTCAATACTCTGACCAAATCAAAGACCAAGCTTGAGCAACAAGTCGATGATCTTGAAGGTTCGCTAGAACAAGAGAAGAAGCTGCGTATGGACCTTGAGAGAGCCAAGAGAAAGCTTGAGGGCGACTTGAAACTGGCCCAAGAGTCCATAATGGACCTGGAGAACGACAAGCAGCAGTCTGATGAGAAGATCAAAAAGAAGGACTTTGAAATAAGCCAGCTACTGAGCAAGATAGAAGATGAACAGTCTCTGGGTGCCcagcttcagaagaagattAAAGAACTCCAGGCTCGCATTGAAGAGCTGGAGGAAGAAATTGAGGCTGAGCGTGCAGCTCGTGCTAAAGTTGAGAAGCAGAGAGCTGATCTCTCCAGGGAACTTGAGGAGATCAGTGAGAGGCTAGAGGAGGCTGGTGGTGCCACTGCTGCTCAGATCGAGATGAACAAGAAGCGTGAGGCCGAGTTCCAGAAACTGCGTCGTGATCTGGAAGAGTCCACTCTGCAGCACGAAGCCACGGCTGCTGCCCTCCGCAAGAAACAAGCTGACAGTGTTGCTGAGCTTGGAGAGCAGATCGACAACCTTCAGCGTGTCAAACAGAAGCTGGAGAAGGAAAAGAGCGAATATAAAATGGAGATAGATGACCTCTCCAGTAACATGGAGGCTGTGGCAAAATCAAAGGCTAACCTAGAAAAGATGTGCCGCACCCTAGAGGACCAGCTGGGTGAACTCAAAGCTAAGAGTGATGAACATGTTCGTCAACTGAATGACATCAGCACACAAAAAGCACGCCTTCAGACTGAGAATGgTGAATTTAGCCGTCAGCTAGAGGAGAAAGAAGCACTTGTTTCTCAGCTGACCAGGGGAAAACAAGCTTACACACAGCAAATTGAGGAACTCAAGAGGCAAATCGAGGAGGAAGTCAAGGCCAAGAACGCCCTGGCTCATTCTGTCCAATCAGCTCGTCATGACTGCGATCTGCTCAGAGAGCAGTTTGAGGAAGAGCAGGAGGCCAAGGCTGAGCTTCAGCGTGCAATGTCCAAGGCCAACAGTGAGGTGGCTCAGTGGAGAACCAAATATGAGACTGATGCCATTCAGCGTACAGAGGAGCTTGAGGAGGCCAAaaaaaagCTTGCTCAGCGTCTACAAGACGCAGAGGAATCCATTGAAGCTGTGAACTCCAAATGTGCTTCTCTGGAGAAGACCAAGCAGAGACTGCAGGGTGAAGTGGAGGACCTCATGATCGATGTTGAGAGAGCCAATTCCCTGGCTGCCAACCTTGACAAGAAACAGAGGAACTTTGATAAGGTCTTGGCAGAATGGAAGCAGAAGTATGAGGAAGGCCAGGCTGAACTGGAGGGAGCTCAGAAAGAAGCTCGCTCTCTCAGCACTGAACTCTTTAAGATAAAGAACTCATATGAGGAAGCTCTGGACCATCTTGAGACCctgaagagagagaacaagaacCTGCAGCAGGAGATTTCTGACCTGACTGAACAGATTGGTGAGACTGGAAAGACCATCCATGAGCTGGAGAAGGCAAAGAAGACAGTGGAAACTGAGAAATCAGAAATTCAGACTGCTCTTGAGGAAGCTGAGGGCACACTTGAGCATGAGGAATCTAAGATCCTTCGTATCCAGCTTGAGCTCAACCAGGTTAAGAGTGAGATTGACAGGAAAGTGGCTGAGAAGGATGAGGAGATGGAGCAGATTAAGAGAAGCAGCCAGAGGGTGATTGAGTCCATGCAGACCACTCTGGACTCTGAGGTCAGGAGCAGGAATGATGCTTTGAGGGTCAAGAAGAAGATGGAGGGAGACCTGAATGAGATGGAAATTCAGCTGAGCCATGCCAACCGCCAGGCTGCTGAGGCCCAGAAACAGCTCAGGAATGTCCAAGGACAGCTCAAGGATGCCCAAGTGCACCTTGACGAGGCTGTCAGAGGACAGGAAGACATGAAGGAGCAGGTGGCCATGGTGGAGCGCAGGAATAACCTGATGCTGGCAGAGATTGAGGAACTCAGAACTGCACtggagcagacagagagaggacgCAAAGTGGCCGAACAGGAGCTGGTTGATGCCAGTGAGCGTGTGGCACTGCTGCACTCTCAGAATACCAGTCTAATCAACACCAAGAAGAAGCTTGAGGCTGACCTGGTTCAAATACAAGGTGAGGTGGATGATACTGTCCAAGAGGCCAGAAACGCCGAAGAGAAGGCCAAGAAGGCCATCACAGATGCTGCCATGATGGCAGAAGAACTGAAGAAGGAGCAGGACACCAGTGCTCACCTggagaggatgaagaagaaCCTTGAGGTTACAATCAAAGATCTGCAGCACCGTCTGGATGAGGCTGAGAGTCTTGCCATGAAGGGTGGAAAGAAGCAGCTCCAGAAACTGGAGGCTAGGGTGCGTGAGCTGGAATCTGAAGTTGAATCTGAGCAGAGACGTAGTGCTGAATCTGTTAAAGGTGTCCGCAAATATGAAAGACGAGTGAAAGAGCTCACCTATCAGACTGAGGAGGACAAGAAGAATGTGATTAGACTGCAGGACCTTGTGGACAAACTGCAGCTGAAAGTGAAGACCTACAAGAGGCAGGCTGAGGAGGCTGAGGAGCAAGCCAACACTCACCTGTCGAGGTACAGGAAAGTGCAGCATGAGATGGAAGAAGCTCAGGAGCGCGCTGACATCGCTGAGTCCCAGGTCAACAAGCTGAGAGCCAAGAGCAGAGAAGTTGGAAAGAGCAAAGATGTGGCTGAATGAAAGATGAAGACCAACATCACTGGGCACCAACAAGCAACCATATAATATGTTTCTTGTTAATGTCCATgcataaactaaataaataaatttgcatcAAATATA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0032982 myosin filament cellular_component
GO:0030016 myofibril cellular_component
GO:0005516 calmodulin binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0003774 motor activity molecular_function
GO:0003779 actin binding molecular_function

KEGG:

id description
K24220 MYH1s; myosin heavy chain 1/2/3/4/8/13/7B/15

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU355200 lncRNA upstream 132655 965530 ~ 1006953 (+) True G299735
TU355199 lncRNA upstream 148901 954435 ~ 990707 (+) True G299734
TU355109 lncRNA upstream 196082 941836 ~ 943526 (+) True G299659
TU355181 lncRNA upstream 266135 873235 ~ 873473 (+) True G299719
TU355157 lncRNA upstream 291886 845468 ~ 847722 (+) True G299695
TU355290 lncRNA downstream 104156 1255066 ~ 1298909 (+) True G299773
TU355306 lncRNA downstream 121237 1272147 ~ 1272673 (+) True G299787
TU355303 lncRNA downstream 127938 1278848 ~ 1301404 (+) True G299786
TU355362 lncRNA downstream 205412 1356322 ~ 1356838 (+) True G299833
TU355383 lncRNA downstream 257592 1408502 ~ 1437257 (+) True G299851
XM_034314217.1 mRNA upstream 10060 1117850 ~ 1129548 (+) True LOC117595666
XM_034314219.1 mRNA upstream 26699 1102826 ~ 1112909 (+) True LOC113539531
XM_034314221.1 mRNA upstream 40632 1088853 ~ 1098976 (+) True LOC113539532
XM_034314222.1 mRNA upstream 55773 1008849 ~ 1083835 (+) True LOC113539455
XM_034314223.1 mRNA upstream 55773 1031174 ~ 1083835 (+) False LOC113539455
XM_034314224.1 mRNA downstream 13178 1164088 ~ 1175373 (+) True LOC113539522
XM_034314218.1 mRNA downstream 28429 1179339 ~ 1190298 (+) True LOC113539523
XM_034314215.1 mRNA downstream 60609 1211519 ~ 1224289 (+) True LOC113539456
XM_034314474.1 mRNA downstream 162797 1313707 ~ 1314702 (+) True LOC117599924
XM_026935334.2 mRNA downstream 189535 1340445 ~ 1344256 (+) True LOC113539530
TU355179 other upstream 274720 863338 ~ 864888 (+) False fbxo42
TU355161 other upstream 294797 842980 ~ 844811 (+) False LOC113539702
XR_004580271.1 other upstream 618721 518567 ~ 520887 (+) False cdkn1a
TU354978 other upstream 779350 356762 ~ 360258 (+) False dram2b
TU355411 other downstream 345950 1496860 ~ 1498487 (+) False LOC117599925
TU355413 other downstream 345950 1496860 ~ 1497627 (+) False LOC117599925
TU358141 other downstream 3316167 4467077 ~ 4469174 (+) False LOC113539599
XR_003403967.2 other downstream 5513164 6664074 ~ 6779358 (+) False cpne5b
XR_004580199.1 other downstream 7350728 8501638 ~ 8558911 (+) False nfasca

Expression Profile