RNA id: XM_034314288.1


Basic Information

Item Value
RNA id XM_034314288.1
length 4960
RNA type mRNA
GC content 0.45
exon number 18
gene id foxp4
representative False

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 7408835 ~ 7541196 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AATCGAAGATTTCGGGCGAAAGGTGCCACGTGATGATGGTAGAATCAGCAACTGAGACCATTCGAACAGCGTCCTCCAACCAAAACGGAGTCAGCAGCCTGACCAGCCAATCGGAGGGCGGAGGAAGAGAGGGTGGGTCCAACGGTGACGCCAATGGGGAGATCAGCCCCGTGGATTTACTGCACCTTCAACAGCAGCAGGCTCTCCAGGCAGCACGCCAGTTCCTTCTTCAACAGGCCACAGGACTCAGCTCGCCCAGCAGTAACGAGGTCAAACAGAGCCCTGtacaggtgccCGTGTCCATGGCAATGATGACCCCACAGATGATTACTCCTCAGCAGATGCAGCAGATTCTTTCACCTCCACAGCTGCAGGCACtgctccagcagcagcaggccCTCATGCTGCAACAgTTGCAGGAGTACTATAAGAAACAGCAGGAACAGCTGCATCTCCAGCTTCTCAGCCAACAGCAGCAAGCAGGGAAGCAGGCCAAAGAGCAGCAGCAGTTGGGCAGCAAACAGCTGGCTTTCCAGCAGCAGCTGATCCAGatgcagcagctgcagcagcagcacatcCTCAACCTTCAGAGGCAAGGCCTTGTCGGAATACAACCTGGCCAAGTCCCTATCCAGGGCCTGCAGCAagCCATGTGTCCCACGGACCTGCAGCAGCTGTGGAAGGACGTGGCGGGCGTGCAGAACGCAGACGAGCCCATGAAGCACGAGGGCCTCGACCTGAGCACCAACAGCTCCAACACTACCTCATACACGGCCTCCAAAGTCTCACCTCAGATCCCCCATCATCCTTTGCCAAATGGACAGAACTCCATGCACACTCCAAAGAGAGACAGAGCAAGACTCTTTGAGTGGATCTCGTCCTTCACCAAGGGGGAGTCCAGTGACGAGCATCTCACCCCTTACCCCAAAGGCACTCCTCTGCAGAGTACccaCTCGTCCCATGAGGAACACACAGCTTCACACCCACTCTACGGCCACGGAGAGTGCAAGTGGCCCGGCTGCGAGGCGCTCTGCGAAGACATGGGCCAGTTCATTAAgCACCTCAACAGTGAACATGCCTTGGACGACCGCAGTACAGCCCAGTGTCGGGTCCAGATGCAGGTCGTTCAGCAATTGGAGATACAGCTGGCCAAGGAAAGTGAGCGTCTGCAGGCCATGATGACCCACCTGCACATGCGTCCATCAGAGCCAAAGCCTTTCAACCAACCGcTGAACTTGGCGTCGAGCGCCTCTCTGTTGAAGCGGGACAGCGAGCCTTTCCCCGAGGGTTTACCTCACCCTCCCACTTCGGCTGCAGCTCCCATCACCCCCCTGAGGCAGGGCCCGTCCGTCATCAGCTCCTCCAGCCTACACGGTGTCGGTCCCATCCGCCGGCGCAATTCTGACAAATACTGCACCCCCATCGCATCTGAGCTCGCCCAGAATTGTGAATTCTACAAAAACGCTGACGTCAGACCTCCATTCACGTACGCTTCTCTGATACGGCATgctATTCTTGAATCCCCTGAGCGACAGTTGACTCTCAATGAGATCTACAACTGGTTTACACGAATGTTCGCCTATTTCAGGAGAAATACAGCAACCTGGAAGAATGCCGTGCGCCATAACCTGAGCCTTCACAAATGCTTTGTGCGAGTGGAGAACGTCAAGGGTGCTGTCTGGACTGTGGATGAAGTGGAATACCAAAAGAGGAGACCACCAAAGATGACCggAAGTCCCACTCTGGTGAAGAACATGATCTCTGGACTGGGCTTTGGTTCCTTGAATGCCAGCTaccaggCAGCACTGGCGGAGAGCAGTTTGAGCCTCCTGAACAGCCCCACGCTGATAAACAACAGCACAGGAGCCAGCCTCAACATGCTGCACGTGGGTCATGATGATGTGAGCAGCACCGTGGAACAGGTGAACAGCAACGGCAGCTGCAGCCCTGGCCTGTCTCCACAACAATACGGACATCAGATCCACGTGAAGGAGGAGCCTGCAGAGCTTGAGGAGGATAGCCGGCCCGTGTCCCTCATTGCGTCTGTCACTCAGAACCTGAGCATGCCCAGTGACGAGCGCGACATGGAGGAGGAGCTTCCCACAGAGGAGCTGGAGTGAAGGTGGGCGGGGTTTGCGGTCCCCGCCTTTCCTTCCTGTGCAAGGCGTTAATAACcacaaagaggaaaaacaaagagagatgATACGGAAGCAACCCCAACATCAAGAAACCAAAACAGGGTGTACCCCTCATCAGTCCATCATGcattaaattttttctttttttagctcAGTTTTTATGTCTCTCTACTTTTCCTCAGTTGATCTCTTCactaagaaaatgttttaaagtccCAGAGACAAGTTCTAAGCCACTCGTGTATTTGAGACTGGTGCAGCCGGTTTGTATCTCGTGCTGGGAACAGTCTGTCTCAGACTGACGGGCGAACGCACCACGAGTCCCCCAAAGCGCCTCACTCTGCTCCTTTCGTCTTATCAGCTTTagttaatttttactttttttttttttttgcctggcCTGAGAACTGCTTTGGGATAAAACTGCAGCTGTGGTTTACCTCGGAATGACGTTCACGCATCCAACAAAGGAAAACATGAACTAAACCATTAGAATGAACTTCAGCCTGGTTCTATCCTGGACTTTTGGGTTCTGTCACGGGTGTCATGCCCCTttgctgaacaaaaaaaaaaaaaaaaaaaaaacaagggatCAAAACATGACCAGAGCAACTGACTCCCTCTGTCTTaccctgacctttgaccttaaGATTTCTGaactcttgaaaaaaaaaaggggtggaGTTTTCCAGTCTTGGAGCagtgttaatattttgtgatCACTAACTGGCTCGCTCTGTCTTCGTCTGATATCTGATGACGAGAAACCAAacagctctctctttctgcttttgTTAGACCAGtctaagaaaaaaagagatgaaatTGTCTCCCctcccccccccaaaaaaaagacatcttttTCAGGAAAAGGAACCAGGACCAACTGGTGTGTCAGCACTGGCAACCACGATGAGGCGTCAAAGCTCAGAGACATGACTCTTTGATTCAGACGTGTGTGACGTAGCTTTTTGATgctcttttaaacatttatttcacattcatttttcacaGTCAGCGACTTCTACAGGATCAGCCTTTCACATTGTGGTGTACTTTAGTTATAAATATGTAGGTTGATTTTCTgttgttattatgtttttttttttaactgaagaatTGTTATCATTCCAAATGGGCTGGATTTTGGAGAGGATATCAATAATCCTTCCTTTTCGCAAAATGCCCTTTTACCTATTACTTAAAGATTATTGAGAAGAGCACTTACCATCAAGATAGCAACGGAAACAAGGACCACAAAAGAAATGGAGAACATTTAATACCAGGAAGATGGGCTCGATCAAAGTGGGTTTGAATGTGCAGGTTCCCTGAAAGATCCCTACaggcactctttttttttttttagcatgtatcattttatttcagaaattccTCTTGAAATTCAGCTGCGATACAAAGCGTTGTTTTAAAGAGATGATATTGTGGTCACAGAATACCTCAATCCACGGTATTCCCTCGCCTCGTCAGGGGGATTCTTACTGTGGCCTAACTATTTCAAAGATCTATACATCATCTAGATATACAAATGCTTATCGAAATGTCTGGTCAGCATGTGAGATTTTCAAACTTTAGCTTTCACCGAACTTggataaacacataaaaattcATAGCAGTGCCATGCCAAATTCaagttttaatttcttttctttttccctcccaatttattttatttacaggttACCAAAGAGATTTGTAGTAAACCAAATACCctccatttttaaatttcttgtcttttcttttcttcctcctaAAGAAACTGTCCAAAAAACAGTTATTCCTTAAATTATTaagctgttattttattgttatttttttaagttgaatATTAAGTGATCTGTTAAAGACTTCTAGTACAGAACATTCCAAAAAACCAAAGTGTGAGATGCGAAAGAGAATTTGGTGGTttaagaagaggaaaaaaaaaatctgtttaaatataGTATGTAAAGTGAATGAGTTAATCCTATGGGGTGTAAGGCCAAAAAAAGAAGCAGTATTGTCAAGCCTCTTTCAGTTCCTTAGATGATAAAGCacttaacaaaaacaaaaacagaaaaaaaaaaaaaaaaaaaaaaaaaagctctaccCTCTCATGCTCAGGCAACGGCAAAGTGTTAAGAACACAACCTTTGAAAATGCCTCAAGGTCTAAGATATAAATACTTTTACAGACATAAGGCACTTGAATGACAAATGCTCAATACACCAATACTCATTTTTCAttagatatactgtatttttatttttcaacaaaacACTCATTTTCACTGTTCTCACATTGCCTTTGGTTTTATTGACACAGTCCATTGAACATTACTGTTTCAAAAGTATTCATCTGAAGGATAACAGACAGGAAATAAATAGATATCTGTTCAACAAAAGCTATACAAAAACAGACATTTGAGGGACAGCTTCAATGATAATTGCACTTCAAATCGTGTTTAATCTGAGAGGAACTTTTTAAACAATACactcattctttttcttctgttttaacTGAGGTTTGTTTAATGCACCTGctatagaaatatttcatttcattctttaaaaaaaaaagataaaaaccaAAAATGTTGCTACCTCCTTTTTGAAATAGTCCACAAAATAAATGGCCAATGAAAAACATCCATAGTTATATACACCATCTTGTTTCCCAttcatccttaaaaaaaaaaaatagttgagAACCAAAATATGCTTGTGAACAAAAAAGCTTGTCTGGCGATCCTTGATCCTGAATTCATTTGCATGAATGAGACCAagcaaacaacacacaccatgctgacaaaaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU360207 lncRNA upstream 1667 7420706 ~ 7446186 (+) True G303891
TU360205 lncRNA upstream 27275 7415415 ~ 7420578 (+) True G303889
TU360102 lncRNA upstream 342324 7101770 ~ 7105529 (+) True G303806
TU360012 lncRNA upstream 446741 6994845 ~ 7001112 (+) True LOC113539683
XR_003403952.2 lncRNA upstream 446772 6996073 ~ 7001081 (+) False LOC113539683
TU360300 lncRNA downstream 163020 7704216 ~ 7705243 (+) True G303966
TU360545 lncRNA downstream 362159 7903355 ~ 7903564 (+) True G304193
TU360554 lncRNA downstream 433430 7974626 ~ 7983380 (+) False lrrn2
TU360645 lncRNA downstream 619485 8160681 ~ 8191673 (+) True G304286
TU360648 lncRNA downstream 620603 8161799 ~ 8165909 (+) True G304289
XM_026935653.2 mRNA upstream 229482 7213709 ~ 7218371 (+) False fam72a
XM_034314028.1 mRNA downstream 8590 7549786 ~ 7593458 (+) True mdfi
XM_026935267.2 mRNA downstream 8684 7549880 ~ 7593458 (+) False mdfi
XM_026935544.2 mRNA downstream 165032 7706228 ~ 7834194 (+) True ppfia4
XM_026935545.2 mRNA downstream 165032 7706228 ~ 7834194 (+) False ppfia4
XM_026935549.2 mRNA downstream 165032 7706228 ~ 7834194 (+) False ppfia4
XR_003403967.2 other upstream 668495 6664074 ~ 6779358 (+) False cpne5b
TU358141 other upstream 2978679 4467077 ~ 4469174 (+) False LOC113539599
TU355411 other upstream 5949366 1496860 ~ 1498487 (+) False LOC117599925
TU355413 other upstream 5950226 1496860 ~ 1497627 (+) False LOC117599925
TU355179 other upstream 6582965 863338 ~ 864888 (+) False fbxo42
XR_004580199.1 other downstream 960442 8501638 ~ 8558911 (+) False nfasca
XR_004580200.1 other downstream 960442 8501638 ~ 8558788 (+) False nfasca
TU362120 other downstream 2971475 10512671 ~ 10513270 (+) True G305515
XR_004580251.1 other downstream 3223078 10764274 ~ 10773442 (+) False LOC113539694
XR_003403954.2 other downstream 3227511 10768707 ~ 10773442 (+) False LOC113539694

Expression Profile