RNA id: XM_034314310.1


Basic Information

Item Value
RNA id XM_034314310.1
length 2849
RNA type mRNA
GC content 0.46
exon number 14
gene id LOC113525392
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 226264 ~ 241666 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTGTGGGTAGTTTAGGAAGAAGGGAGGGGCATTTTACGTATTTCGGCAGAAACTCGTCATTTGTTTCGGAGACTCTGAATTTCTTCATTCTGACTTTGACTCCATTAAACACCTTCACGGCTTTTTATTACACACAGCAGCGCGGTCTGAGCACACACCTGGAGAGACTGGTCAGCGAACTTcacagcgtgtgtgtgcgtgtgtgtctgtgtgtgtgagagagagagtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgtgtatcgagGTGAAGTTGGCGGAGAAGAACAAAAGCATCGCGGGAAGCGTTAAAGAAAAGCGCCGAGCTCTCAGCCGCAGgtagACATGGCGATGCGAGGCCACACCTCCGGGTCATTAATGAGTAATCACACTAAGGAGAGAGTGACCATGGCCAAGGTGACTCTGGAGAACTTCTACAGCACACTGATCACACAGCacgaggagagagagatgagGCAGCAGAAACTGGAGAAGGTGATGGATGAAGAGGGACTTCCTGATGAAGAGAAGCGAATGAGACGCTCTCAGCATGCGAAGAAGGAGACGGAGTTCCTGCGCTTGAAGAGGACAAGACTCGGTTTAGATGATTTTGAGTCACTGAAAGTGATTGGACGAGGAGCATTTGGAGAGgTGCGCCTGGTGCAAAAGAAGGACACGGGTCACGTTTATGCCATGAAGATCCTGCGTAAAGCCGACATGTTAGAAAAAGAACAGgtgGCTCATATCCGTGCAGAGAGAGATATACTGGTTCAGGCAGACAGTCTGTGGGTGGTGAAGATGTTCTACAGTTTCCAGGATAAACAGAATCTCTACCTGCTCATGGAGTTCCTGCCAGGAGTTGTCACTGTGCCCCCTGTAGGTGACATGATGACACTGCTGATGAAGAAGGACACTCTGACGGAGGAGGAGACGCAGTTCTACGTGGCTGAAACGGTTCTGGCCATCGACTCCATCCACCAGCTCGGCTTCATCCACAGAGACATCAAACCTGATAACCTGCTGCTCGACTcaaagGGTCATGTTAAACTCTCTGATTTTGGTCTGTGTACTGGACTTAAGAAAGCTCATCGTACAGAGTTCTACAGAAACCTGAGCCACAGCCTCAACACTGACTTTACCTCTCAGAACATGAACTCTAAGAGGAAAGCAGAAACATGGAAACGCAATAGGAGGCAGCTGGCGTTTTCCACAGTGGGAACTCCAGACTACATCGCTCCGGAGGTGTTTATGCAGACAGGCTACAACAAGCTCTGTGATTGGTGGAGTCTGGGTGTCATTATGTACGAGATGCTGATTGgatatCCACCCTTTTGTTCTGAGACTCCTCAGGAGACGTATAAAAAGGTGATGAACTGGAAGGAGACGCTGGTTTTCCCCCCCGAGGTGCCGATCTCCGACAGAGCCAAACACCTCATCCTCAGGTTCTGTTGTGAAGCAGATCATCGTATCGGAGCTGCAGGAGTTGAGGAGATTAAGAGGAACCCGTTCTTCGAGGGAGTTGATTACGATCACATCAGagagagaccgGCGGCGATCCCCATCGAAATCAAGAGCATCGATGACACATCAAACTTTGACGAGTTTCCTGAGTCAGACATCCTGCAGCCTgctgCAGCGGGCAGTAGTCATGCGGAGTCGAACTATAAGAATAAAGACTGGGTTTTCATCAACTACACGTATAAGCGGTTTGAGGGTCTGACAGCGCGGGGGGCGATCCCGGCCTACATGAAGGGAGGGAAGAGATgagcgcagacacacacacctgtctgtctctctgtctgtctctctgtctctctgtctgtctgtctgtctgtctgtctgtctgtcccctCTGTCTCACCCCAGTACAGTAatcccccaccccacccccgaCACTACGAGACTTCATTCTATCCCATCATTCCCTGCTGCCACAGAGTGCTGTGTTTCTATTGGCTGAGAGCAAGAGGAACtatacttgatttatttttattctgacaAACCCCGCCTCCTGCACTGTGATTGGCTACTCTCAGTCCACCAATCACACACTGGAAACATTGTTCATGTTGCTGTAGCAACCAGAGTAAAACACCAGAGGTACAGAAACATCAGAGCGCTGTTTTCACATTCTCCTCTCGAAAATGTCTTCTGCTGGAAttctgtgtttcattttcacttgtttcacactcagccaatcagaacgcagGCTTtcctggttgccatggtgacatCATACCTTTGCAGTGAGGGTTCTAGAATTTAATGATTGAGCAACAACATACAAACACAGCAGCTGTTgatcaaatcacacacacacacacacacacacacacacacattttccactATAAGCTcttttatacatatatagagTCATATAGCCTAtttttgctacatttatttttgtatcaaacacacacacacacacacacacgtctaatGCTCAAACAATATTTCATCATAAATGTCTTGTGTCATCAGTGGTGCGtataatcttattttattttattttattttttattctattttattataatcaccaaagtgcttgttttgtttctctttataCTGTTGCCATGACGACAGAATGCTGTTTCTGATATTGCTCATAATCGTTATTTATTggtgtgtatattgtgtttatattttgctgtAATATAAGATGTGTAGATGGTACGAGCTGAATGGGAGAcagtatgacacacacacacacacacacacacacacacacacttttttcttccatcttttgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggttattCTATGTTTAAATCATATAATAAAGCCGTTCAGTCGTGATGTTTGA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08790 STK38, NDR; serine/threonine kinase 38

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU354869 lncRNA upstream 9117 209994 ~ 217409 (+) True G299482
TU354873 lncRNA upstream 21614 203812 ~ 204912 (+) True G299486
TU354902 lncRNA upstream 47861 173753 ~ 178665 (+) True G299503
TU354887 lncRNA upstream 75889 140422 ~ 150637 (+) True G299494
TU354879 lncRNA upstream 78969 136884 ~ 147557 (+) True G299492
TU354931 lncRNA downstream 10057 251723 ~ 254232 (+) True G299528
TU354966 lncRNA downstream 109994 351660 ~ 354432 (+) False dram2b
TU354974 lncRNA downstream 115096 356762 ~ 360258 (+) False dram2b
TU355032 lncRNA downstream 276751 518417 ~ 520943 (+) False cdkn1a
TU355052 lncRNA downstream 323610 565276 ~ 565508 (+) True G299618
XM_034314456.1 mRNA upstream 37209 165616 ~ 189317 (+) True LOC113525237
XM_034314382.1 mRNA downstream 41201 282867 ~ 295160 (+) False pparda
XM_034314383.1 mRNA downstream 42680 284346 ~ 295160 (+) True pparda
XM_034314355.1 mRNA downstream 74302 315968 ~ 326307 (+) True wdr77
XM_034314353.1 mRNA downstream 74303 315969 ~ 326307 (+) False wdr77
XM_034314472.1 mRNA downstream 109922 351588 ~ 358366 (+) False dram2b
XR_004580270.1 other upstream 37751 165615 ~ 188775 (+) False LOC113525237
TU354973 other downstream 115096 356762 ~ 360258 (+) True dram2b
TU354975 other downstream 115096 356762 ~ 360258 (+) False dram2b
TU354977 other downstream 115096 356762 ~ 360258 (+) False dram2b
TU354978 other downstream 115096 356762 ~ 360258 (+) False dram2b
TU354979 other downstream 115096 356762 ~ 360258 (+) False dram2b

Expression Profile