RNA id: XM_034314329.1


Basic Information

Item Value
RNA id XM_034314329.1
length 5281
RNA type mRNA
GC content 0.46
exon number 17
gene id fbln2
representative False

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 11608922 ~ 11671459 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGTCCCTCCCCTCCGAGTTAGTTAGCGGGGTCGTGGAGCGCAGCTGTGTGGAAGCTGGAGCTCTGCACACACATCAACTCGCTATTCGGAACTTTGGCACGAGACCGGCAGCGCGCGAGCTCCCTCTCCACACACTTCTCTAGGTTTCACTGACCGCTGACAGTTCAAGAGACGAGAGACAAGCTTGTTTCATATTGTGCAGGATTGGAGAAACCAGTACCCAGCTTTGTTTACTATACTAAAACTAATATAACTTCATATCTGAATAACTGGCAGCCCGCTTTGCCATAATGAGAGTGTTGTTTTTGCTGCTTTTGCTCTGTGCGAGTGAAAGTCTCTGCCAGAAAGACTGTACTGGAGTGGAGTGTCCACTTCTTAACAACTGTATTGAGGAAGTTTTGGAAAATGGTGCCTGTTGTGCCACTTGTCTACAAACTGGCTGCACATGTGAGGGCTACCAGTACTATGACTGTATTAATGCTGGCTTCAGATCTGGCCGGGTTCCCGAGGGAGAATCTTATTTTGTGGACTTTGGAAGTACAGAGTGCTCTTGTCCACAGGGCGGCGGGCGGATCAGTTGCCATTTTATTCCATGTCCTGAGCTTCCCGCTAACTGCATTGAAGTGTCGGAGCCAGCGGATGGGTGTATTCAGTGTGAGCGGATAGGCTGCGTGTATGAGGAGCAGAAGTATGAGGCTGGCCATTCATTCCGCATGGACCAAGCCTGCCAAGTCTGCCACTGCCCCAATAATGGCGGGAACTTAATGTGTTCCCTGATCCCAGACTGTGATCCAAGGCAAGTCCATAAACCCATGCTTGCAACTACCACAGGGGAAAGCACACCATGGAGACATcagaataaaatccaaaatcttTTCAACCATCAAGGCTCAAGGAATCCCTTCTCCAAACCTTTTCCACAGTCATTCCATGACAGTCTGTCTCCATTCAAACCAACCCCAAGTGCCAtggatgaagaagaggaggaggaggaggaggactaTGACTATCCTACTATAGATTCCTCAAAGCAACCTCGGCATGACCTAGCCTCTCCAGCGGAATCCTACATTACCTCAGTTTCTGGTCTGGAAAACAGTCCCTCTCACCAAGCCAGGGGAACCAAGCAGGAGCTTAAAGAGAGATTTGGTGTTCATGAAGCAGCAACCTTACGTGAAGAGAGGACAGATGGGGCAAAATATAGTCGCCATAAAGTGAACTCTACGAAAGACACTTCAGAAGTTTCTGAAGACAATACTAGAGGAGCACAAATTAACATTCCTAAAGTTAGTGCAAACAAAGAGAAAGTCCCCAGCTATAGAGATACCACACATGAAGAACAATTCTCTGTTTACAGAGACACCACTGTAAATGAGAGTTTAGGCCCCTATAAAGACAACAGCAACACAGAGGTTCTTGAggagagtgacagagacagcCTGAGGAAGGCGTCAGAAAAGATCTATAAAGAAACCACTGACAGTAATGAGTTTGATTCATATGAAGACACCACATACAGTGAAATAGTCACTGACTCTCCAGTAACTGTAGTTCCAACTATGCCTCAAACTACAGAGGAGACACAGATGACAACAACATGGCAGACTACTGGAGGCAGTTTTTCACCAGTTCAAGTTTACCATAGCACACCAGAAACAAGGGAATTTTACAGCACACAAAAAGAAGAGATGAACGTAAAAGAGCAAAGAATCTCATTACATAATGTCACAGAGAGTGACAACAATCATGAGAAGGATAAAATGGTTGACGAACAGGAAAAATACACTTTTACCAGTTCCCAAAGCATCTCAAGCAGTGACTATGCATCTTCAGCAGCACCTGACAGACCTTTAGAAGATCACGAAACCAAACCAAAGATAAAACCAGAGCTGTATACGATTCCTCCTGTGATATTCAGCCCAACCAGCCAGTCACTCTTGAGAGTGAAGGAAGAGGATGAACAGCTTCTAAATAAACAGTCACAGAGTCTATTTGAAGTTGCAGAGGAggtggaagaagaagagaaggaagaaaggGAAGAGAAAGACAACACACTCAGTTCCATTACAAAAACCAGTGAGAGACTGTCTGCTCTGGTCATAGTGGAGACCTGCTGTAAAGCTGGGCAGAAATGGGCCTCAGAGAACCAGCACTGCAACCATCTGACCCCTGTAATAAAAGAAGACTCTGTCTGTGGggctgTTCAGGAGCATTGTTGTGCAGGTGCACTGAGAGAAAGCAGGTGTTTAACTGGAATGTATGCTGCCAGAGCTGGTGAGGTGTGTGAAGAAGACAGCAGCCCACACTGTGGAGAAGATACCCAAaagGAGTGTTGCAGCTGCTGTGCACTTGGTTTGCGTCTTCGACGTGAGGGAAAGGGCTGTAACGCACATCAACACCTTAGCTACCCTTGTGGACACATTTTCCTCACCTGctgtgaggaagaagaggaagggcATAGCACACCTGTACtaaagagaaaggagagaccAATACCTACCACCCTGCCTAAAAAAGTGGCTGACAGACCATTCCATAAGCAGTCGCTCTCCATCGCAGAGTCTGAGCATACATCCAACGCtgtggagaacctggaggatgTAGACGAGTGTGAGAGATTTGAGGGGCAACGCTGCCTTCATATCTGCATCAACACTTTGGGATCCTACAAATGTGAATGCCACCCTGGATATACACTGATGCAGGATGGACACACATGTGCACTCGAGAATACAGAGGAGGACAACAGAGTGACAGAGGAAGACAACGTGTTTACTTTGGCCACACCACCTCAAGAGACCACCCAAATCACCTCTGTACAAAATCCATGTGCAGgtaATGGCCCATGTTCTCAGCAATGCTCTGCTGTGGAAGGACGGGTCCGCTGTTCCTGTTTCCCAGGATTCTCTCTGAACTCTGATGGACGGACATGTGAAGatgtgaatgagtgtgtgacaaacacacacacctgccagcCCAATGAGCGCTGTGTGAACACAGTAGGAGCTTTCATGTGTGAGAGGCAGATTTCTTGTTCAAGTGGCTACCAACTGAGGAATGGAGAATGTGAAGATATTGATGAGTGTGCTGTGCGGAGCCATGACTGTGGCTCGGGATTCCAGTGCCAGAACACACCCGGCTCATTCCACTGCAGTCCGAAGCAGCAGCACTGCCTCACCGGCTTCTCTCAGGACCCCCACGGCAACTGTAtcgaCATTGATGAGTGCAGAGTTGTGAGAGAGCCATGTATGGCAGGCTTTAACTGCATAAACACTGTGGGCTCCTACACCTGCCAGCGCAAGATTATATTATGCAGCCGAGGATATCACGCCAGCCCTGATGGTTCACGCTGCATtgATGTGGATGAGTGTGCAACAGGAACACACCGCTGTTCTGAGGGTCAGATCTGCCACAACATCCCTGGCAGCTACCGATGTGACTGCCAGACAGGCTACCAGTATGACGCCATTCGCCGGCTGTGCATTGATGTGAACGAGTGTTGGCGTTACCCAGGACGTCTTTGTTCACAGACATGTGAGAACACTGTGGGCTCTTACAAGTGCTCCTGCACCACAGGGTTCTCCCTTGCCTTTGATGGCAAGAATTGTGAAGACGTTAACGAATGTGAGAACAATCCCTGCAGTCAGGAGTGTGCCAACATCTACGGCTCCTACCAGTGCTACTGCCGTGTGGGATACTATTTGAAGGAGGACAGCCACACCTGTGAAGATATTGATGAGTGCTCTCAAAGCATTGGGAACATGTGCGCCTTCCAGTGTGTGAACGTTCAGGGCAGCTACCAGTGTGCCTGTCCCCGTCATGGCTATACTGTGTCGTCCAATGGACGCACATGTCAAGatattgaCGAATGCGCGACAGGAACACACAACTGCTCGACAACCCAAACATGCTACAACATCCAGGGAGGATTTCGCTGCCTGTCCTTTACATGTCCTGAGAACTATAGGAAGGTGTCAGACACACGCTGCGAGCGGGTAAGCTGCTTCGGCTCTCAGTGCCAGAACATGCCCATCCGCATCACCTATTACCAGCTTAGTTTCCAGACTAACATCATCATCCCAGCGCAGATCTTCCGCATTGGCCCCTCTCCGGCCTACTCAGGTGATAGCATCATCATTAGCATCCCACGTGGCAACGAAGAAGGTTACTTTAGCACACGCCGGCTCAACAGCTTTACTGGAGCCGTGTACCTGCAGCGGCAGCTTCATGGCCCACGTGACTTCCTCATCGACGTGGAGATGAAGCTGATGCGCCAGGGCACCGTCACCACGTATCTCACCCGCATCTACATCTTCATCACAGCTCACTCCATGTGATGACACTTTCTGTTGCATCACATCTGCTTTCATAAGGTGCTAAGCTCCTGAGGGGGTTGTCAGAATATCTCATTAGCTGCTTTGCTGAACAGATTTTTGAAAGAAGCTTGTCCAAAAAAGAGGTTTGATGGTGCTTTGTTTTTACAGGAATCCAACAGCTTGTGTTCTGTCATGacttgagacaaaaaaaagggaaactGCAAAGACTGACAGAAATATTTTGATTTCCATCTACATTTCAtctatgtaataataaaaattatggTGTGGCCAGATGTTATTTTTCCTGAAACAATTATGATTTCTTTGAAACATTTTCTATAGTGAATCATTTATGTTTTTACAAAGCAGTGCTTCCTGGCGGGGGAAAACAGTGGAGAGGATGGAGTGGTAAATAACATGGATCCTTAATCCTTCTTCACGCAGTGCTGCATCCCTTTATTTCAGTCACTATAAAAGTTTCAGTCAGTCTGGGAACAATTAGTTACTGTACTCTAAAATGTAACGAGTTGCATCGATATATACTACTAATGAATACATTGACAGCACTTCTTTTCAATATCAAAGGCAAATATTGCAAAAACATCTTTTGTAATCACTGTGATTAATATTTTGCAACTGAAAGGatgtataatgttttttttttgtaatatttgtagtTTGCTTGTTCTGTTTGTATCTGTTAATGCAAGGCACATTTGACACTCAGACTTGGAGTCTGTGTGAGCTACAATACAGCACTGAGGACATTACGTTTCTAAGACTTTTTGTATGGAAGTATTGTTTTTTGCTTTCTATATCTATTTCTGTATGTTATCTAATCCTCTCAGGGTAAAAGCAtcatatcatttgttaatcCCATCTTCACAGTGTCTAAGCGATTACCAAATCACCACTCATTcgataaacaaacaataaataacagaCCCACAATGAGCATTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU362777 lncRNA upstream 65786 11542933 ~ 11543138 (+) True G306106
TU362588 lncRNA upstream 178879 11429819 ~ 11430045 (+) True G305920
TU362571 lncRNA upstream 198628 11409531 ~ 11410296 (+) True G305903
XR_004580205.1 lncRNA upstream 253847 11352876 ~ 11355077 (+) True LOC117599893
TU362532 lncRNA upstream 291424 11317187 ~ 11317500 (+) True G305864
TU362882 lncRNA downstream 80766 11752225 ~ 11754031 (+) True G306199
XR_004580179.1 lncRNA downstream 165879 11837338 ~ 11843605 (+) True LOC113537887
TU362969 lncRNA downstream 251010 11922469 ~ 11922676 (+) True G306284
TU362971 lncRNA downstream 253402 11924861 ~ 11925433 (+) True G306286
TU362975 lncRNA downstream 258253 11929712 ~ 11930201 (+) True G306290
XM_026932743.2 mRNA upstream 25475 11543739 ~ 11583449 (+) True hdac11
XM_034314370.1 mRNA upstream 25475 11543739 ~ 11583449 (+) False hdac11
XM_034314292.1 mRNA upstream 335445 11256969 ~ 11273479 (+) False cfap92
XM_026932863.2 mRNA downstream 122552 11794011 ~ 11797434 (+) True barx1
XM_026932864.2 mRNA downstream 122558 11794017 ~ 11797434 (+) False barx1
XM_026932911.2 mRNA downstream 396165 12067624 ~ 12096756 (+) True alpl
XM_026932486.2 mRNA downstream 505631 12177090 ~ 12185144 (+) True nmur3
XM_026932640.2 mRNA downstream 594246 12265705 ~ 12413095 (+) True ephb2b
TU362774 other upstream 93111 11515059 ~ 11515813 (+) True G306103
TU362623 other upstream 127824 11480669 ~ 11481100 (+) True G305955
TU362537 other upstream 282564 11325604 ~ 11326360 (+) True G305869
TU362531 other upstream 293488 11314184 ~ 11315436 (+) True G305863
TU362496 other upstream 387409 11215015 ~ 11221515 (+) False dynlrb1
TU363207 other downstream 786142 12457601 ~ 12462536 (+) True G306480
XR_004580240.1 other downstream 2699329 14370788 ~ 14476385 (+) False asic1b
TU364869 other downstream 2843151 14514610 ~ 14521147 (+) False gpd1b
XR_004580181.1 other downstream 4817902 16489361 ~ 16501684 (+) False amigo3
XR_004580182.1 other downstream 4817902 16489361 ~ 16494139 (+) False amigo3

Expression Profile