RNA id: XM_034314334.1


Basic Information

Item Value
RNA id XM_034314334.1
length 1662
RNA type mRNA
GC content 0.54
exon number 11
gene id hnrnpa1a
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 20870652 ~ 20882365 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AATCACAATCGCACGCTTGACCGTGCGTCATGACGTATTTCATCTTCTTCGCGAGGCGCTTTCGGTGAAGGCTTGTGTTTCTGAGCAGCACCGAGCCGCCGCCATGTCTAAAGAGACGCCTCGCGAGCCCGAGCAGATGCGAAAGCTCTTCATCGGGGGTCTGAGCTTCGAGACGACAGATGAGAGCCTTCGGGCGCATTTCGAACAATGGGGAACCCTGACAGACTGCGTGgtgATGAGGGATCCAAACACTAAGAGGTCCAGGGGGTTCGGCTTCGTGACCTACAGCTCGGTGAACGAAGTCGACGCAGCGATGGACGCTCGGCCTCACAAAGTGGACGGGAGAGCCGTCGAGCCCAAAAGAGCCGTCTCGCGAGAGgaCTCGTGCAGGCCGGGCGCTCACTCCACGGTGAAGAAGATCTTCGTTGGGGGAATCAAGGAGGACACGGACGAGGAGCACCTGCGCGACTACTTCAGCCAATTCGGCAAAATCGAGGAAGTGAACATCATGACGGAGAAGAACAGCGACAAGAGGAGGGGCTTCGCCTTCGTCACGTTCGACGACCACGACGCCGTGGACAGGATAGTCATTCAGAAGTATCACACGGTGAACGGTCACAACTGTGAAGTGAGGAAAGCGCTTTCCAGAGAAGAGATGAACAGAGTGTCCATGAACAacagagGCGGCCGCGGAGGCGGTGGAGGAAACTTCGGCGGTCGAGGAGGTGGAGGATACGGAGGTGGATACGGTGGCGGAGGAGGAGGACGTGGCGGATACGGAGGCGGAGACGGATACGGAAACGGATACGGAGGAAACGGTGGATATGGTGGAGGCGGTCCTGGTTATGGCGGTAACCGTGGTTACGGAGGAGGTGGAGGCGGTGGCTATGGCAACCAGGGCGGCGGCGGAGGTGGATACGGAGGCGGCGGATACGACAACTACAACGGCGGAGGAGGCGGAGGAAACTACGGAGGAGGAAACTTCGGAGGCGGTGGCGGCGGCGGCGACTACAACGACTTCGGCAACTACAACAATCAGTCGTCGTCGAATTACGGCCCGATGAAGGGAGGAAACTACGGCGGTGGCGGCAGgagcggcggcggcggcggtcCGTACGGCGGCGGATATGGCGGTGGTTCCGGTGGCGGTTACGGAGGCGGATCTGGAGGAAGGAGGTTCTAAGTTTTAGGCCACAGTACTTAGGAGAGGAGAGCCAgagagaggatgatgaggatgatgatgaggatgatgatgatgatgacagggAAAGGAGAGAAATGAAGGAAGCAGGTTTACACACCTAGAATCTGCCCAGCGATATTAACGTCTGCCACACGCCAGGAAACGTGTATgatagaggagaaagagaaaaatcatGTCCGGGTGCCGGGGGTGGGATGAGTGGGGCGGGGTTGGGGGTCATGTGAGGTcaacgttgttttgttttgtttgttttaaataagtATTTTTGATCCTGGAcgatattattttattgttagctCTTTAGCTTAACATTGATGTCTGTGAAGTGTAAATCATTCCATTTTAGGCAGgttctttatatttcttttttttttttttttttatttgctaccTTTTTAGGGTTTTTTATGTAATCCGCCATCAATCAAGATGAAATAAATCGCTCctgagttttttta

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU368910 lncRNA upstream 17137 20807858 ~ 20853515 (+) False znf740a
TU368909 lncRNA upstream 27197 20842278 ~ 20843455 (+) True G311489
TU368938 lncRNA upstream 65728 20767078 ~ 20804924 (+) True G311508
TU368929 lncRNA upstream 88292 20781762 ~ 20782360 (+) True G311505
TU368924 lncRNA upstream 100824 20767626 ~ 20769828 (+) True G311504
TU368906 lncRNA downstream 4039 20882446 ~ 20884841 (+) True G311486
TU368908 lncRNA downstream 24905 20903312 ~ 20937881 (+) True G311488
TU368902 lncRNA downstream 48596 20927003 ~ 20983511 (+) True G311482
TU368903 lncRNA downstream 54271 20932678 ~ 20943629 (+) True G311483
TU369035 lncRNA downstream 69914 20948321 ~ 20951538 (+) True G311591
XM_034314152.1 mRNA upstream 9925 20831856 ~ 20860727 (+) True znf740a
XM_034314156.1 mRNA upstream 9925 20831856 ~ 20860727 (+) False znf740a
XM_034314164.1 mRNA upstream 9925 20831856 ~ 20860727 (+) False znf740a
XM_034314158.1 mRNA upstream 9925 20831856 ~ 20860727 (+) False znf740a
XM_034314165.1 mRNA upstream 9925 20831856 ~ 20860727 (+) False znf740a
XM_026932826.2 mRNA downstream 18573 20896980 ~ 20901411 (+) True smug1
XM_034314359.1 mRNA downstream 20708 20899115 ~ 20901411 (+) False smug1
XM_034314335.1 mRNA downstream 154716 21033123 ~ 21046577 (+) True calcoco1b
XM_034314468.1 mRNA downstream 235027 21113434 ~ 21135134 (+) True LOC113537842
XM_034314469.1 mRNA downstream 235027 21113434 ~ 21135134 (+) False LOC113537842
TU368156 other upstream 1086739 19768990 ~ 19783913 (+) False vamp3
TU368157 other upstream 1086739 19768990 ~ 19783913 (+) False vamp3
TU368136 other upstream 1353493 19508255 ~ 19517159 (+) False phf13
TU367971 other upstream 1782846 19087025 ~ 19087806 (+) True G310681
TU367679 other upstream 2178638 18687453 ~ 18692014 (+) False snrpe

Expression Profile