RNA id: XM_034314353.1


Basic Information

Item Value
RNA id XM_034314353.1
length 1459
RNA type mRNA
GC content 0.52
exon number 11
gene id wdr77
representative False

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 315968 ~ 326307 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGGACCCGGAAGCGGAAGCAGACACGAGCGCGTGCGCGTGGAAACACGTGGGTTCATTCATCTGCTTGGTGAATTTTCACAGCGCCGTTAGAGTTCATTAATCAGGAAGATCTGAAGAGTTTATTAAGATTTATAGCGCGCGCTCAGtgtaAAGACACGGTGAGATGCTGCAGGAGCCCCGCTGGCGGATTCCCCCCAACGCTCCCGCGTGCATGGAGAGACACCTGGAGAGCGCGCGCTACCGCAGAGATGGTGTGTTCCTGCTCAGTGCCTCCAGTCTGACGGGTCGGTGTTGGTTCGGTTCTATTTGGATTTATTCTGATTCTAAACTGGCTCCCAATGAGGGCTTCTGTAAGGCGGGGCTTCAGACGGAGGCGGGGCTTAATGATGTCAAGTGGCTGACGGACAGGACCATCATCACAGGATCCGATTCTGgtgcagtTGAATTATGGGATTTGGCTGAAGATGAGCGCTTGTTGGTGAACAGGTTCAGTCGTCATGATCATGATCACATCGTCACGACGATCAGTCCAGCGGCCGACGCCCACCACATCGTCAGTGGCAGCATGgactgcagGGTTAAAGTTTGGGATCTGAATCAGGAGTCTGTGATCAACACCTACAATGtgcacTCCATGGCAGTGAGCTGTGTGTCCTGCAGCCCAACTGACCAGTCGCTGTTCCTGTCCTGTGCTCAGGATGGCCGATTGCTGCTGTGGGACCGCAGAAAACCCAAACCTGCCTCTCGCttagatgtGGTTTCCCCGAGCTGTTCTGTGACTGCTGTTGTGTGGCATCAGACCAGCACCATCGCCTACGgtgatgaGTTGGGCAGGGTAACTGTGACAGATTTCCAGgctgcaggacacacacagacgatgaacacacacacacgcagagtgTCAGAGCTCGCCTTCTCctcacacagttctcCTCTCCTCGCCTCAGTGAGTGATGACTGTACCGTCGCCGTGGTGAACACAGAGCTCAGAGAAatttacAGAGACAGTAGACACCAGGACTTTGTGCGTGGTGTGTGTTGGGTTCCAGGCGGCTCAGACGTGCTGACCACTGCAGGGTGGGATCACCAGGTGCTCCATCATAATGTGCAGGAGACACGCacttaatgcacacacacacacacacacacacacacacacacacacacacacacacacacactcttactacatacacacagacacacacacacactcttaccacacacacacacacacacacgcttaccaCACACGCATGCTTACAACACAAACTCTTcccacatatgcacacacacatgcttttaaTACACACAAACTTCAAACACATTCTTAACAGgcacttaacacacacagatgcgATTAACTCGGGCGCGCTTAAAACACACCCGCTTAACACACACCCgcttaacacacacatccacttgtttcagtgtttaataaagtgtgtgttcaggaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU354931 lncRNA upstream 61737 251723 ~ 254232 (+) True G299528
TU354922 lncRNA upstream 79479 236076 ~ 236490 (+) True G299522
TU354869 lncRNA upstream 98560 209994 ~ 217409 (+) True G299482
TU354873 lncRNA upstream 111057 203812 ~ 204912 (+) True G299486
TU354902 lncRNA upstream 137304 173753 ~ 178665 (+) True G299503
TU354966 lncRNA downstream 25353 351660 ~ 354432 (+) False dram2b
TU354974 lncRNA downstream 30455 356762 ~ 360258 (+) False dram2b
TU355032 lncRNA downstream 192110 518417 ~ 520943 (+) False cdkn1a
TU355052 lncRNA downstream 238969 565276 ~ 565508 (+) True G299618
TU355059 lncRNA downstream 275251 601558 ~ 602113 (+) True G299625
XM_034314382.1 mRNA upstream 20809 282867 ~ 295160 (+) False pparda
XM_034314383.1 mRNA upstream 20809 284346 ~ 295160 (+) True pparda
XM_034314311.1 mRNA upstream 74303 226268 ~ 241666 (+) False LOC113525392
XM_034314472.1 mRNA downstream 25281 351588 ~ 358366 (+) False dram2b
XM_034314151.1 mRNA downstream 50255 376562 ~ 380543 (+) False zgc:153675
XM_034314150.1 mRNA downstream 50258 376565 ~ 380541 (+) True zgc:153675
XM_026912036.2 mRNA downstream 79801 406108 ~ 409450 (+) True btg2
XM_034313965.1 mRNA downstream 105205 431512 ~ 439177 (+) True arl8a
XR_004580270.1 other upstream 127194 165615 ~ 188775 (+) False LOC113525237
TU354973 other downstream 30455 356762 ~ 360258 (+) True dram2b
TU354975 other downstream 30455 356762 ~ 360258 (+) False dram2b
TU354977 other downstream 30455 356762 ~ 360258 (+) False dram2b
TU354978 other downstream 30455 356762 ~ 360258 (+) False dram2b
TU354979 other downstream 30455 356762 ~ 360258 (+) False dram2b

Expression Profile