RNA id: XM_034314383.1


Basic Information

Item Value
RNA id XM_034314383.1
length 2447
RNA type mRNA
GC content 0.51
exon number 8
gene id pparda
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 282867 ~ 295160 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCTCCTCACTTCTCCGTTTAACTGAAATCTCTTCGTCTTTCCTCTTTCACACATCCTGAAAATCTGCATGTAAAATCCATCACATTCCCTTTTCATCCCAAACCGCTCTTCTGGTTATTCCACACTGAAATCCAATCCCAACTCTCCCGTCTCACTCCGTCTCACTCCGTCTCACTCCGTCTCACTCCGTCCTGCACCCAGAGCCTGGTGTCTCGTCCCCACGTCTCGTCTGAAGCTCCCTCCATCACTGCAGCTCACATCCCGTCCTCAGCACCTCGCCTCGTCCCGCTCCGCTTCCTCCTGCTCGATCCGAACGCAGCTGAACCAACTTTCAGTTCTGTAGTGAGATTTATTGTTTCTTGAATTGGCCAATCGCAGGAAAGACGCAGGGAGTCTGTTCGTCCTGGTCATGCGGACATCGAGGACGTTCTGCCATGGAAGGCACTGAGTCGGCCATTTTAGCAATGAAGAACAGGAAGTCGGTGGAGGTGGACAGAGCTTCCTCCCCTtgcagaagccacgcctccccGAAAGCGGGTCCAGAGGAGGAGGGTTTTGAGAAGGTGCTGTCAGAGCTGAGTGCTGCTGCAAATTTGAATGTGGAGGCGGAGCTGGGTGTGGAGGCGGGATTTGAGGAGACGCCAGACTGGGGGCGGGGCTGTGAGGAAGGAGATGCAGCAGATGAGGTGGAACCTGAGAACAGCAATGGCAGCATGACTGAGTTCCAAAATCCTGCTCCATCTACAGatgtgtcgCACACTCCGTTGTCAGAGCAGCTCCTGTTGGGTCGTGATGACGTGAAGGTGGTTAATGTGGAGTGTCGGATCTGTGGAGATCAAGCATCAGGATTTCATTATGGAGTGCACGCCTGCGAAGGGTGTAAGGGTTTTTTCCGCCGCACGGTGAGAATGAAACTCGAGTATGATAAATGTGAACGCAGCTGCAAGATCCACAAGAAAAACCGCAACAAGTGTCAGTACTGCCGCTTCCAGAAGTGTCTGATGCTCGGTATGAGTCACGATGcgatTCGGTACGGCCGCATGCCTGAGGCGGAGAAGAGGAAGTTGGTGGAGGGAATGTTATCAGACAGTCGGACAGCGAGCAGCTCCAACCTGAAATCTCTGGCTAAAAAAGTGTACAATGCGTATCTGAAACACCTGAACATGACCAAGAGGAAAGCACGCAGCATCCTGACAGGAAGAACCACCTCCAACCctTTTGTGATCTATGACCTGGGCTCTCTGTGGCGTGCGGAGAGCGGGATGGTGTGGGACAGCGGGGTTCTGAGTGGACGAGCGCAGAAGGAGATCGGCGTTCACGTCTTCTACCGCTGTCAGTGCAGCACCGTGGAGACTGTACGACAAATCACCGAGTTCTCCAAGTGCATCCCGGGATTCATCGACCTGTACCTCAACGACCagGTGACGCTGCTGAAGTACGGTGTTCACGAAGCGATCTTCGCCATGCTGCCATCTCTGATGAATAAGGACGGGTTGCTAGTGGCGAATGGGCGGGGCTTCGTCACGCGTGAGTTCCTGCGCAGTCTCAGGAAGCCGTTCAGTGAAATCATGGAGCCGAAGTTCGAGTTTGCTCTCAAGTTCAACGCGCTGGAGCTGGACGACAGTGACCTCGCGCTGTTCGTTGCCGCCATCATCCTGTGTGGAGatcGTCCTGGGCTGATGAACGTGAAGCAGGTGGAGGAGATTCAGGATAAGATCCTGCAGGCGTTGGATCAgcacctgcagcacacacaccccGACGCCGCGTacattttccccaaactgctgcagAAACTGGCAGACCTGCGACAGCTCGTCACTGAGAATGCACAGCTCGTCCAGATGATCAAAAAAACTGAGTCTGAGACCTCACTGCACCCTCTACTGCAAGAGATCTACAGAGACATGTACtgaacgcacacacactcacacacacactcacacacacacacacacacacacactcacacacacacacacacacactcacactcacacacacacacacacacacacacacacacacacacacacacactcacacacacacacacatcagcagaaCAGCTGTGCTGAATCACAGTGTGATAAAAGAATCACAGACGAATCGGTTTCAGAACGACTCATTTAAATGAACGAGGAAATTCATTGGATTTGGAAGCAGGATTCAATCCAtagagtttatatttatttttatttgtttttttttctgtgtatgtttattaatgttagaaactatttaataatgtacataTTCAGAGGATTTAACAAGGTTTAAGTGATGAATCAGATGAATCGAATGAATCGAAATGTAATTAACTGTAATGGGTTATTTAAAGAGAATCTAATCAGTAAAGTGAGTCATAATGTCCATaactgaatcacacacacacacacacacacacacacacacacacacacacacgcatcgcacacacacacacaca

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU354931 lncRNA upstream 30114 251723 ~ 254232 (+) True G299528
TU354922 lncRNA upstream 47856 236076 ~ 236490 (+) True G299522
TU354869 lncRNA upstream 66937 209994 ~ 217409 (+) True G299482
TU354873 lncRNA upstream 79434 203812 ~ 204912 (+) True G299486
TU354902 lncRNA upstream 105681 173753 ~ 178665 (+) True G299503
TU354966 lncRNA downstream 56500 351660 ~ 354432 (+) False dram2b
TU354974 lncRNA downstream 61602 356762 ~ 360258 (+) False dram2b
TU355032 lncRNA downstream 223257 518417 ~ 520943 (+) False cdkn1a
TU355052 lncRNA downstream 270116 565276 ~ 565508 (+) True G299618
TU355059 lncRNA downstream 306398 601558 ~ 602113 (+) True G299625
XM_034314308.1 mRNA upstream 42680 226265 ~ 241666 (+) False LOC113525392
XM_034314355.1 mRNA downstream 20808 315968 ~ 326307 (+) True wdr77
XM_034314353.1 mRNA downstream 20809 315969 ~ 326307 (+) False wdr77
XM_034314472.1 mRNA downstream 56428 351588 ~ 358366 (+) False dram2b
XM_034314151.1 mRNA downstream 81402 376562 ~ 380543 (+) False zgc:153675
XM_034314150.1 mRNA downstream 81405 376565 ~ 380541 (+) True zgc:153675
XR_004580270.1 other upstream 95571 165615 ~ 188775 (+) False LOC113525237
TU354973 other downstream 61602 356762 ~ 360258 (+) True dram2b
TU354975 other downstream 61602 356762 ~ 360258 (+) False dram2b
TU354977 other downstream 61602 356762 ~ 360258 (+) False dram2b
TU354978 other downstream 61602 356762 ~ 360258 (+) False dram2b
TU354979 other downstream 61602 356762 ~ 360258 (+) False dram2b

Expression Profile