RNA id: XM_034314393.1


Basic Information

Item Value
RNA id XM_034314393.1
length 3499
RNA type mRNA
GC content 0.41
exon number 17
gene id cpne1
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 11079060 ~ 11107165 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GATGCTTGTGCAGGCGGCGAGAGTGTGCACGCGCAGAGGAGACGTCGTTTTTTAGTGACAAATCTCAACCAACTAAAACAAATCTGTTAACGCAGATATTTTCGTCGagagttgattttaaatgattgaCGACAAGATTGGCTTGGGTTTCGTCCACAACTAATAGCGAACCACCACTAATTATACAGatggcGACCCAGTATATGACCAAGATTGAACTCTGCATATCCTGCAAAAACCTTCTAGACAAAGATATTGGCTCAAAATCGGACCCACTGTGTGTTCTGCTGCAGAGTGTGGGGGATGACAAATGGACCGAAGTGGACCGCACAGAAAGAGTGAAGAACTGCCAGGACCCAGAGTTTTCCAAAAGACTGTGTATTGACTACTTTTTTGAAAGGGTGCAAAAACTAAAGCTAGGTATCTACGACATTGACAACAAAAGTGTCGACCTTAAAGATGACGACTACTTGGGAGGTTTTGAGTGTACCCTTGGCCAGATTGTGTCAAGTAAGAAGATTACCAATCCTCTTCAGCTCAAACCAGGCAAACCAGCTGGCAAAGGCACAATAACGATTGTCGCAGAAGAAGTGAGGGATAACCGAGCCATTGTGCTGGAGACAGAAGCCAAAAATCTGGACAAGAAGGATGTGTTTGGCAAATCTGATCCTTTCCTGGAGTTCTTTAAGCAGGCTGATGATGGCACATGGCAGCTAGTCCACAGGACTGAGGTCATTAAGAATAATTTGAACCCATCCTGGAAGAAATTTGCAGTTTCTCTACATACTTTCTGTAATGGAGACCTGAACAAGCCAATTAAGGTCCACTGCTTTGATTATGATAACGATGGCTCACATGATCTCATTGGCGTTTTTCAAACTAAAGTGGCTGAGCTTCTGAAAGTAGACAGTGGTTCTACGGTGGAGTTTGAGTGTATTCATCcagagaagcagaagaagaaaaagagctaTAAGAATTCCGGCATTGTCCGTTTCAAATACTGCAAGTTAGAGGCACAGTACACATTCCTGGACTATGTGATGGGAGGTTGCCAAATTAATTTTACGGTGGGTATCGACTTCACTGGCTCTAATGGAGACCCTCGCTCCCCGGATTCTCTGCACTACCTCAGTCCTGATGGGGTAAACCAGTACCTCAGTGCAATCTGGTCTGTGGGCCTTGTGATCCAGGATTATGACATGGATAAATTGTTTCCTGCCTTTGGATTTGGTGCTCAGGTGCCTCCAAAGTTTGAGGTGTCGCATGAGTTTGCTCTAAATTTCAATCCCAGTAACCCTTACTGCAAAGgAGTGGAGGGCATCGTACAGGCGTATCGCGGTGTTCTGCCACAGGTGCGTCTGTACGGCCCAACTAACTTTTCCCCCATCATCAACCATGTGGCTCGTATCGCTGCAACAGCAGCTCAGCAGCCAACTGCAGCGCAATATTTCGTGCTGTTGATCATAACGGACGGAGAGATCACTGATCTGGACCAGACCAAGCAGGCCATAGTCAACAGCTCCAAGCTCCCCATGTCCATCATTATTGTGGGTGTTGGTGAGGCAGACTTTAAGGCCATGGAGGTACTGGATGGAGATAACGGTGTCCTTAAATCTCCCACCGGCGAACAAGTGGCAAGAGATATAGTACAGTTTGTGCCTTTCAAAGACTTTGTCAAGGCTCCCAGAGAAGCTCTGGCCCAAAGTGTTCTTGCTGAAGTGCCCAATCAGCTAGTGTCTTACTTCAAGATGAGGAATCTGAGCCCTGTCAACCTTCCTGCTCCTAGAAAGTAGAGGCAGGTGTTTGCAAGATCAGAAGGACCACTAAGTTCAGGGGAAAAATTATGAAGACCTTTTTGTATTATGCAATGAAAATAATGCATAGCACAATAGCCTTCCTTAGCCATATTTTCTGTTTACCTTTTCTGCTCTTTCACTGTGTTTACACTTTCCAACTGAACTTTCTTCAAATGTTAAAGCGATCATCAGTGATGGTTTTCAAGTTCTGGATTATAGACTTAGAAATGGATTATGTCGTCCCTCAGTCACTATTCAGTTCCTACAAAACAGCATTATGTATGTTAAATCACACTTAAAATGTTTTGGTCGATTCTTTCTTCCATTCTTATGCATCTTTGTGAACTTCATGACTCTTTTGATgacatcacatttttgcatccACATCAGGATACAGATAGTCCTTCAGCATTCCAGCTTCAtgacaaactttttttaaatggatattTTAAGGAAACAATTATAAATggtataaattttatattagcCTGATAGGGCTTTGAGCTTCACAATGTtgttaataacattaaaatgctCAGTGTATCATGTAGTTGGAATTGCATCTTTGGCCTTTTCTTGGAAGTTCATTGTAAAAAGCAATCACTACATTCAACATGCTGCGCTGCTCAAGCAACGCATTTTAAAGGGAACAGGAATGTTTTATTGATAGTTCTTATTGATTTGTGTTGCATAACTTCAGTTTCCCCAGCTGTAGGCAGTGAAAAATCTAGCCTTTTTTTTGTAGAGTGCATTCTACAAAAGAACCAAGCTGAATTTGTCACATTTGTGGCATGGCCAATCGCTATCATTTAACAGAAGCATGTCAGTTACTGtcagaatgaaatattttatcttGCATAGCAGTAGGACTGCCCAAACATGTATGAATCTTGGATGCTGGCCTAAAATTAATTGCACTTTCTAGTTCATTTATGGCATTAATGCTGACTATGACTATCATGTACACCAACAATTTTTCAATGTTTAGCAGAGCCTAGAGCCAAATTAGAGCTTATGAAATTCCTTCCATTATAGTAATGCACTTGgttttacattatataaacGACCACTTTAAACTTTAATCCACTTTATTTAGGTCTTGGGGCCTTATctcttttaaataatattcGTTGCACTTCTCAATCACTATAGATTCTGAAAGATTCcctgtgtttttaataattacccTGTCTAACTTCCCTAATGTGTATAAATACCAACTATTTGTGTAGCTCATTTTCTGCACTTTCTTAAAATGGTCACCAGAACTGAAACACCAGCACTCTGCATAATGACTGCAATCATGTAGCTCAATCAGTATATTAGCCCCCCCAGCTAtgcaaatgtttgcaccttGACATGCCATAATCAAAGTGTCAGATATTCTACACACAGTATATTTACACTTATACAAGATTAACCAATGCTTTTTGGATACATGCCTTAAACAGTATGCCTCGAGATCATCATAATTGCTGTTAGTAACTTTCTGTCTGTAGAGACTGGTGTGAATGTTTGAAGATAATGATTGTTTGACAGGATTTTTCAAATACTTCCTCTGTTATGtgctttactgtgtgtgtgtgagtatgaaaAATGCCACTCAATAGTTATCACTTGCATCTCTTGACTACAAGTTCTCATCtttgtgcctttttttcccttaatttttttcaaataaataaactcagctAAGCTGAATA

Function

GO: NA

KEGG:

id description
K24524 CPNE1_2_3; copine 1/2/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003403810.2 lncRNA upstream 3480 11073762 ~ 11075590 (+) True LOC113538022
TU362371 lncRNA upstream 3527 11073895 ~ 11075543 (+) False LOC113538022
TU362373 lncRNA upstream 3527 11073895 ~ 11075543 (+) False LOC113538022
TU362259 lncRNA upstream 278839 10797969 ~ 10800231 (+) False G305642
TU362260 lncRNA upstream 279942 10797969 ~ 10799128 (+) True G305642
TU362383 lncRNA downstream 22123 11129288 ~ 11129487 (+) True G305734
TU362384 lncRNA downstream 27350 11134515 ~ 11134724 (+) True G305735
TU362514 lncRNA downstream 166420 11273585 ~ 11275616 (+) True G305849
TU362498 lncRNA downstream 191157 11298322 ~ 11300713 (+) True G305833
TU362499 lncRNA downstream 196125 11303290 ~ 11304633 (+) True G305834
XM_026932796.2 mRNA upstream 14969 11061008 ~ 11064101 (+) True ppcs
XM_026932797.2 mRNA upstream 14969 11061012 ~ 11064101 (+) False ppcs
XM_026932795.2 mRNA upstream 14969 11061204 ~ 11064101 (+) False ppcs
XM_026935673.2 mRNA upstream 305628 10768707 ~ 10773442 (+) True LOC113539694
XM_034314339.1 mRNA upstream 789255 10280536 ~ 10289815 (+) False mon1bb
XM_026932971.2 mRNA downstream 126 11107291 ~ 11140313 (+) True fer1l4
XM_026932893.2 mRNA downstream 34071 11141236 ~ 11178126 (+) True unm_sa1614
XM_026932895.2 mRNA downstream 34071 11141236 ~ 11178126 (+) False unm_sa1614
XM_034314494.1 mRNA downstream 107587 11214752 ~ 11221540 (+) True dynlrb1
XM_026932973.2 mRNA downstream 107829 11214994 ~ 11221540 (+) False dynlrb1
XR_004580251.1 other upstream 305628 10764274 ~ 10773442 (+) False LOC113539694
XR_003403954.2 other upstream 305628 10768707 ~ 10773442 (+) False LOC113539694
XR_004580252.1 other upstream 305628 10768707 ~ 10773442 (+) False LOC113539694
TU362120 other upstream 565800 10512671 ~ 10513270 (+) True G305515
XR_004580200.1 other upstream 2520282 8501638 ~ 8558788 (+) False nfasca
TU362376 other downstream 4574 11111739 ~ 11112518 (+) True G305727
TU362445 other downstream 61294 11168459 ~ 11178473 (+) False unm_sa1614
TU362496 other downstream 107850 11215015 ~ 11221515 (+) False dynlrb1
TU362531 other downstream 207019 11314184 ~ 11315436 (+) True G305863
TU362537 other downstream 218439 11325604 ~ 11326360 (+) True G305869

Expression Profile