RNA id: XM_034314409.1


Basic Information

Item Value
RNA id XM_034314409.1
length 3298
RNA type mRNA
GC content 0.43
exon number 16
gene id cdk18
representative False

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 18972962 ~ 19037668 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGATGAGCTGCTTTATCCATCAATTCCTCAATGGTGACGTTGACcagaagacagaaagatggacagaATTTTTCATAGGAGTTCGGGGCActaagaaatgaacaaaatgaagaacTTCAAGCGCCGTTTCTCGCTGTCCGTGCCAAGAACAGAGACGATAGAGGAGAACGAGTTCACCGAGCAGATAAACCAACTCAACATCCAGCGCAATGAGGATCTGGTGCCGAACAGCCTGGGCCTGCACGCTCTACACCCGTCGCCCAGTCCACTGGCCTCCGACCATCAGGCTCCATCTCCCACCCAGCTGCACTACCACAGCAAAGTCCAGCACCGCCGCTTCTCCATGGAGgaTGTCAGTAAGCAAATGTCTCTGCCCATGGACATTCGTTTGCCCCCGGAGTTTCTGAAGAAGTTGCAGTTGGAGAGCCCAGAATCATGCAAACCACTTAGCCGCATGTCCAGACGAGCCTCACtgTCCGACATCGGTTTCGGGAAACTGGAGACCTACGTGAAACTGGGCAAACTGGGAGAGGGCACTTATGCTACAGTATTCAAGGGGCGCAGCAAGCTGACAGAAAACCTGGTGGCCCTGAAAGAGATCCGGCTTGAGCATGAAGAAGGAGCCCCTTGCACTGCCATCAGGGAAGTTTCGCTGCTGAAAAACCTGAAACACGCCAATATCGTGACTCTGCATGACATCATCCACACCGACCGCTGCCTCACTCTGGTCTTCGAATATTTGGACAGCGACTTGAAGCAGTACCTAGACAACTGTGGAAACCTCATGAGCATGCACAACGTGAAGATATTTATGTTCCAGCTTCTGCGTGGTTTATCTTATTGTCATAAGAGAAAGATTCTACACAGGGACCTCAAGCCGCAGAATCTGCTCATCAACGAGAAGGGAGAACTGAAGCTAGCTGACTTTGGTCTGGCAAGAGCAAAATCTGTGCCAACGAAAACCTACTCCAATGAGGTGGTGACTTTGTGGTACCGGCCTCCAGATGTCCTGCTGGGTTCCACAGAGTACTCGACTCCCATAGACATGTGGGGCGTAGGGTGTATTTTGTACGAATTGGCTACGGGACGGCCCATGTTCCCAGGCTCGACTGTCAAAGAGGAGCTGCACCTGGTTTTTCGCCTCATGGGAACCCCGACTGAAGAGACCTGGCCCGGGATTACAGCGAATGAGGAGTTCAAGTCATACCTTTTCCCCCTGTACAGAGCCCAGGCTCTAATAAACCACGTTCCCAGactgGACACCGAGGGCATCGATCTTCTCTCCGCTCTTCTGCTGTACGACACCAAAAAAAGGATCTCAGCCGAGGCGTCTCTGAGACACGCGTACTTCCTCAGTCTGGGGGAGAACATTCACTCCTTACCAGACACTTCGTCAGTGTTCTCGCTAAAGGAGGTGCAGCTCCAGAAGGACCCTGGCCACCGGAGCTCAGTCTTTCATCCAGGTCGGGGAAAGAATCGTAGGCAGAGTATATTCTAACAGCTGATATATGGAGGAGGAACATCATCACCACGAAGCGAATGGCTGTAAATCTAAGCAAACTGCCAAGCTGTATCCCAAAACCTcctcacaccaacacacactggaaatttgagattttcacacacacacacacacacacacagctgacttAAGCCAATTCTATTCACTGCTGTTTTATTGAATTTGacaaaattacacaattacatCTGAGCAGCTATTTCCCGCTGTGCTTTCTCAACACTCGTATCtggatctgaaaaaaaattttatttatggcCCATGCTCATGTTTAACTTATGAAAGGAATAATAATTCTCTTGAGAAGTGACTGGATCATATATATGatcattacaaaatatataaaacaacgACTGCAGTATTGTACTCCAAAAGTATTTAAAGGacaaatccaccctgaacaacgtACATATTCATCtctataattaacatgtgatcttcaccTGCATCCCAgattaattttataatgaaattctgaggtTTTTTCTATTTACACTTCTATTAACATCTTTCATCAACATATCGGTCTATTTTTACATTGGTTAATGGTTTACTATATAACCCACAATGCTGTTATACCTGCTGATAATGGTGTAGCAGGATTTAGCCCATGGTTCTTCTCTAcataaagagagcgatgcagcggtgctttagtgctttagtcctttagtttgtccagctctctcacttcctcatctaTACAGTCTGCTCAAAAACTTCAAAACTTCAATTTTCATGCTAAACAACACCATCACGCTCGCCTTCTCacagatcgctaactagctgagccgagtTTCTACCATAACTCAGCGTCGTAtaactgcattgcattctgggaccaCGTTTGCACCAATGTCTAACACTGCTTCTACAccagatttctcattaatatgatgttgagTGTCACTGGAAAttggtgagtgagaaagagaagttgttttgtttttagggaTCACTCATGTTTGAGATCGGTGAAATCACATCAGAGTGGCAcacaaccgctaacttctcactggaataatgaaaatcaaattagcaccagaatcactaaacacatcacaaatatttcaatatagaCATATTAAACATGTCTcaggtggagttttcctttaaatctataaaaaaaaatggaataggCAGCACAAAAAGAGGACCTGGTATTAAACACGTTTTAATGACATGGTCATAAGTGAGCTGAAAAGTCTGTCACAGTTATACAGGGGcggaaaaatgcagaaaaaaaagtggtattgtGTCAAAATGGACCCAATTAAAAGTGGACACAACTCAACGAAAGTTAAAAAGTGTCCACGCTGAAATGTACTTAAAGATCTAAAAGTTCAAGTTAAATGATGATATTGCACGTCAGGACTTTTTGCTTTTCAACATGATCTCCCTCTttcaaattcataaaaaatcTGCAAGACTCGCATCAcgtttcaattcaattcacgtTACAAATGTTAAAGTAGAGGTTAGAGGCGGACTTTGGGGcggggctagccttcactcctttccttacagctttatttgtttgtagtcATTCTACATGTTTGAATTCATATAAATTTGTTCTGTAATGAAGTataaatgaataacacatgacaggttgtgctgttataggaagctAATCAACAGCAGGCTGATGTGAAAAAGCAAAGTTACCACAGCGATTTGAGAAcgattagattttttaaaatttattaattaccatgtcacactttttatccatttatagttacatttagtattttgtttctctcttttgaagttagtaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004580273.1 lncRNA upstream 15507 18914294 ~ 18964490 (+) True LOC117599928
XR_004580274.1 lncRNA upstream 20430 18914294 ~ 18959567 (+) False LOC117599928
TU367817 lncRNA upstream 73374 18900260 ~ 18906623 (+) True G310547
TU367819 lncRNA upstream 73374 18904829 ~ 18906623 (+) False G310547
TU367692 lncRNA upstream 170960 18738966 ~ 18809037 (+) True G310446
TU367933 lncRNA downstream 22667 19060335 ~ 19066486 (+) True G310649
TU367966 lncRNA downstream 43866 19081534 ~ 19082121 (+) True G310679
TU367970 lncRNA downstream 44701 19082369 ~ 19085507 (+) True G310680
TU367980 lncRNA downstream 52714 19090382 ~ 19122056 (+) True G310686
TU367999 lncRNA downstream 72461 19110129 ~ 19113027 (+) False G310703
XM_026932834.2 mRNA upstream 176095 18790926 ~ 18803902 (+) True si:ch211-112f3.4
XM_026932736.2 mRNA upstream 238440 18715221 ~ 18741557 (+) False LOC113537968
XM_026932563.2 mRNA downstream 4914 19042582 ~ 19058802 (+) False mfsd4aa
XM_026932561.2 mRNA downstream 4917 19042585 ~ 19059543 (+) True mfsd4aa
XM_026932959.2 mRNA downstream 300264 19337932 ~ 19343063 (+) True c20h1orf50
XM_026932957.2 mRNA downstream 312080 19349748 ~ 19363983 (+) True cdc42
XM_026932958.2 mRNA downstream 312080 19349748 ~ 19361222 (+) False cdc42
TU367680 other upstream 287983 18687397 ~ 18692014 (+) True snrpe
TU367679 other upstream 287983 18687453 ~ 18692014 (+) False snrpe
TU366607 other upstream 1716334 17260979 ~ 17263663 (+) True LOC113537865
XR_004580181.1 other upstream 2478313 16489361 ~ 16501684 (+) False amigo3
TU367971 other downstream 49357 19087025 ~ 19087806 (+) True G310681
TU368136 other downstream 470587 19508255 ~ 19517159 (+) False phf13
TU368156 other downstream 731322 19768990 ~ 19783913 (+) False vamp3
TU368157 other downstream 731322 19768990 ~ 19783913 (+) False vamp3
XR_004580241.1 other downstream 1832984 20870652 ~ 20882365 (+) False hnrnpa1a

Expression Profile