RNA id: XM_034314437.1


Basic Information

Item Value
RNA id XM_034314437.1
length 1539
RNA type mRNA
GC content 0.41
exon number 6
gene id ogna
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 13753968 ~ 13757523 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAGTCTGCTCCATAAACGCTTGCTTAAGAATCCCTTGGCAGCTCCACATGTAGCTTTAAATACTGATTTGACAGATCACGTTTTACTCTCAGGCACTGAGAAAATAGCAACCTCTGCCTGCGCTGCTGTGTAACGCCTGTATCAGAGCAACAAGTACATCCCtgagcctacacacacacgatgGGGACCAGAGCAGGAACGTTTATTTCTACCTTTGTATTTGCGTCATGGGTGATATTAATCTCAGGAACAGAGCAACACTTAAGCTCAAAAGAGATTACAATACCATTTGAAGAGCCTGATTTGGACACATGGATGGAAAAGAGAGATACCGACGCTTTCCTGCCTGCTGACACACCGGATGGCTTTGTAGAACTCAAACCTGAAGCGAACGCTTCTGACCTTCCAAcatgtctgctgtgtgtgtgtctgacggGATCGGTGTACTGCGAGGAAGTCGACCCTGATATGACATCAGTGCCGGCTCTTCCTAAAGAGACAGCCTATCTATATGCTCGTTACAACAAGATAAAAAAGATTACTGCGAAAGACTTCGGAGAtattgTTACACTGAAAAGAATAGATCTGACTGGAAACTTAATTTCGGAGATTGAGGACGGAGCCTTCATGAAGCTGACGTTGTTGGAGGAGCTCTCCCTCGCTGAGAACCGGCTTGTGAAGCTGCCAATGTTACCACCCAAGCTCATGTCATTTAATGCCAATCACAACCGCCTCAAGACCAAAGGAGTAAAAGTCAACGCTTTCAAGAAATTAACCAATCTCAGAAATTTATATCTTGCCCACAATGAGTTGGAGGCAGTCCCAATAATTCCAGAGAGTGTGCGCATTTTTCATATTCAGAACAACAACATAACTGTTGTTACTACTGACACCTTCTGCAAACGCAACAACAGCTACTACATCCGGCCCAACATTAATGAGATCAGGATGGATGGAAACCCGGTGATCCTTGCAAAGGACCCCAACGTGTTCATCTGTCTGCAGTCCTTGCCAATTGGACGGTACCACTGAAAGCCCCTTAAAAAACCCACAAATCTCTAAAAGTGcctcaaacaaaaacaactatGGACTGAAAGGTGTTTCATGTCCAGTTTGCCACCTTGCAAAAGCAGGGTATGTGAATTGTTGATTACTATGTTATGTGAGTACTGAAATTCCCTCTTGAACTCTGTGGCTTAAATGTAattgttaaatgtaatatatatataaaacaattctGTTGAAAGCTGCATAGTAATTTACGGTTTCCATAAAACCGAACACTTGCAGCATTACAAAAATTATGTGAACTGCTTTCACTTCTACTGTTTAAGAAGTCTGCCAAGTTAATTAAGTTAAGCATTCATTCCATATGTACATGCGTCTACAAGGATGTAGTCACTCTATCTTGATAGAACTGAACTATTTATGTGATTGCTACCTATGTGAGAATCAAGTAGGCTGTACAGTTATAcatgatattaaaatattatgctATATGTTTTCCatagttattttaataaatctcgctcttttttt

Function

GO: NA

KEGG:

id description
K08126 OGN; osteoglycin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU364036 lncRNA upstream 61056 13691106 ~ 13692912 (+) False ippk
TU363977 lncRNA upstream 229914 13522009 ~ 13524054 (+) True G307161
TU363969 lncRNA upstream 252137 13501466 ~ 13501831 (+) True G307154
TU363884 lncRNA upstream 403288 13350453 ~ 13350680 (+) True G307079
TU363759 lncRNA upstream 420720 13332806 ~ 13333248 (+) True G306961
XR_004580226.1 lncRNA downstream 182903 13940426 ~ 13960190 (+) True LOC117599900
TU364104 lncRNA downstream 246085 14003608 ~ 14003831 (+) True G307272
TU364094 lncRNA downstream 257639 14015162 ~ 14016394 (+) True G307262
TU364127 lncRNA downstream 294312 14051835 ~ 14058202 (+) True G307293
TU364114 lncRNA downstream 338747 14096270 ~ 14096786 (+) True G307281
XM_026932584.2 mRNA upstream 5235 13745004 ~ 13748733 (+) True omd
XM_026932583.2 mRNA upstream 20686 13725860 ~ 13733282 (+) True aspn
XM_026932582.2 mRNA upstream 32248 13705721 ~ 13721720 (+) False ecm2
XM_026932581.2 mRNA upstream 32248 13705722 ~ 13721720 (+) True ecm2
XM_026932899.2 mRNA upstream 62344 13674354 ~ 13691624 (+) True ippk
XM_034314436.1 mRNA downstream 18973 13776496 ~ 13792919 (+) True nol8
XM_026932944.2 mRNA downstream 19105 13776628 ~ 13792919 (+) False nol8
XM_026932945.2 mRNA downstream 19105 13776628 ~ 13792919 (+) False nol8
XM_026932646.2 mRNA downstream 59332 13816855 ~ 13833491 (+) False nisch
XM_026932645.2 mRNA downstream 59332 13816855 ~ 13833485 (+) False nisch
TU363207 other upstream 1291432 12457601 ~ 12462536 (+) True G306480
TU362774 other upstream 2238155 11515059 ~ 11515813 (+) True G306103
TU362623 other upstream 2272868 11480669 ~ 11481100 (+) True G305955
TU362537 other upstream 2427608 11325604 ~ 11326360 (+) True G305869
TU362531 other upstream 2438532 11314184 ~ 11315436 (+) True G305863
XR_004580240.1 other downstream 613265 14370788 ~ 14476385 (+) False asic1b
TU364869 other downstream 757087 14514610 ~ 14521147 (+) False gpd1b
XR_004580181.1 other downstream 2731838 16489361 ~ 16501684 (+) False amigo3
XR_004580182.1 other downstream 2731838 16489361 ~ 16494139 (+) False amigo3
TU366607 other downstream 3503456 17260979 ~ 17263663 (+) True LOC113537865

Expression Profile