RNA id: XM_034314452.1


Basic Information

Item Value
RNA id XM_034314452.1
length 3701
RNA type mRNA
GC content 0.50
exon number 19
gene id sfmbt1
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 4432525 ~ 4449377 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGTCATGTTCTATGCGGTTTCAGACGCGGACTCTGGTCAGGACATGTCAGAGTTTAACTGGGACGATTATCTGGAGGAGACGGGGGCTTTGTCTGTACCTCACCATGCCTTCAAACATATGGATCAAGGTCTGCAGACTGGTCTGACTCCGGGTATGAAGCTGGAGGTTCTGGTGCGTGGAGAACCCGACGGCGCTTACTGGGTggccaccatcatcaccacctgtggccagctgctgctgttgcgcTATGAAGGCTACCAGGACGACCGGCGCGCCGACTTCTGGTGTGACGTCATGACCGCAGACCTGCACCCCATCGGCTGGAGCAGGCAGCAGGGTCGACCCATGAGACCGCCTGAGGgtGTGCGAGAGAAACATCAGGACTGGGAGTCCCTGCTGGAGAAATCTCTGTCAGAATCCTGCAGCGCACCGGTCAACCTGCTGGAAGGGGCCCAGCGTGGCTGCAACCCTGTAGACCTGCTGAGTCCGGGTCTCAGTGTGGAGCTGATGGATAAAGAGGATGCCGGAGTGGCCTGGGGTGCAGCGATCGAGGATAACGTCGGAGGCCGACTCCGTCTCCGCTACGCTGGCACAGAAGGACTCCCCGACACAGACTCCATCACTTGGACTTTCTACCTGAACCCCCTGCTCCACCTCCCTGGCTGGGCCAAAGAGCATGGCTGCACCCTCAGACCTCCATCAGTTTTGCTTCCACTGCGCACTAAGGAGGAATGGGAGGAAGTGAGACAGGCCATCATTAATCAGCCACAGGATTCGAGTATTAGTGAGGAGTTCTATAAGgatcgTCCAGCCATCACTCCGCACTGCTTTGCTGAGGGGATGAAGCTGGAGGCAGTGGATCCTGTTGCGCCTTTCACCATCAGCCCTGCTTCCATTGCCAAGGTGTTCAGTGATCAGTTCTTCCTGGTGCAGATGGATGATATGAGAGAGGAAGCCgagagaaaaggaggaagcAGATTGTTCGTCTGTCACAGGGACAGTCCTGGAATCTTTCCTGCTCAGTGGAGTTTCAAGAATGGAGTGAAGCTCAGTCCACCCCCAGGGTACCAAGGGCAGGACTTTGACTGGGCTGACTATCTGAAACAGTGCGAGGCCGAGCCAGCCCCGCAACACTGCTTCCCCTCTGACCCATCTGATCAGTGCTATAAAGAGTCCATGATGTTGGAGGCAGTTAATCCTGTTTGCCCTCAAAACATTCACGTGGCCACAGTCaccaaggtcaaaggtcaacatATCTGGATTAGACTAGAAGGAGTGAAGCAACCTGTTCCAGAGATCATAACTCATATGGACTCCATGGACATCTTCCCTGTTAGTTGGTGTGAAACCAATGGCTACCCTCTTCAGTACCCCTGCAAACCCAAagttgaaaagcagaagaaaatcGCCGTCGTGCAACCGGAGAGGCACAGAGTGCCAGCTAAAGACTCCTCCCCTGATGCCCTCAAACAGCCTCTGAACAGCCAGACAGAGATGAGTCAGGCTAATGGGAAGTACAGCTGCCCCAAGATCTACTTTAACCACAGGTGTTTCTCCGGTCCGTACCTCAATAAGGGCCGCATCGCTGAGCTGCCGCAGTGTGTAGGTCCGGGTAACTGCGTCCTGGTGCTCAAGGAGGTGCTGTCCCTGCTGATTAACTCAGCCTACAAGCCCAGTCGTGTGCTCCGTGAGCTCCAGCTGGACCAGGAGGGACGCTGGCAGGGTCATGGAGAGATTCTCAAAGCCAAATACAAAGGGAAGAGCTACAGGGCAACAGTGGAGATCGTTCGCACCGCGGACCGTGTGGCTGAGTTCTGCAGAAGAACCTGCGTTAAGCTGGAGTGCTGTCCTAATCTGTTCGGGCCGCGCATGGTGCTGGAGCGCTGCTCAGAGAATTGCTCCGTGCTCACCAAAACCAAATACAcatattactatgggaagaagaagaGCCGACGTGTAGGTCGTCCACCGGGAGGCCACTCCAACATGGATGCGGGTGTCAAGAGACGAggcaggaggaagaagagaaggaagCAGCTGTTCGTCCACAAGAAGAGACGCTCCTCCGCCTCCGTGGACAACACGCCTGCAGGGTCTCCTCAGGGAAGCGCTGACGAGGAAGACCTGGATGAAGACGACTCGCTGAGCGACGACAGCGGCTCCGAGCAGGACGAATTGATGGAAGATTCTGAATACTCAGAAAAGAAATCACAGCCCCCGACACCCTCACCCTCTCCTCCTGAAACCCCCCGGCCCACCCGCCGACGCCGCAAAGCTCGCTCTCCTTCATACTCAGACGACGAGAACAGACCTCCATCACCCAAAAGTCCCTTTCCTGAGGCTCCTCAGAAGCTGTGCTTGGACAGCAGTCCCCTGGAGTGGAGCGTTACAGACGTGGTGCGTTTCATCAGGACCACCGACTGTGCTCCACTCGCACGCATCTTCATGGATCAGgaGATTGACGGCCAGGCCCTGCTACTGCTAAACCTGCCCACTGTGCAGGAGTGTATGGACCTGAAACTCGGTCCCGCCATTAAGCTGTGCCACCACATCGAGAGGGTCAAACTGGCGTTTTACCAGCAGTTTGCCAGCTGAGAGTAGCAGGATCAGACAGCGGGGGAGGATTTATTTTATCTCTCattgtgtgtatgcgtgtgtgggtgtgttctTTTTTCCTTAGAGTTTTGTTCTAGATAGAAATAAGCTACTGAAGGGGAAGCTGGTGTGGGAGAAATCAGTGGTGTTTGTCACGAAGCTCTGCTCAGACTGAACCTGCGTTATAGGCGATTTTACCAGATTTATTAGAGTGAATAATCGGTCATTAGGTAGTGTTTTCCTTAAGGCTCAAGCGAGCTGTTTGTTTCTGAAACCTTTAATAATCGTTGAGCGGATGACAATGCAAGAATCTTAAGCACAAAGACCAATTGCCCGTGTATAGTAAGTGGTATGCAAACGTGTACATAGTAGTTTGTCTGTATATAAGTGTAAATATCAGATATTCCCTTTAGAGGGATTAAATGTCCCagttccttttctttttaaataacaaagttTGGGGATTACACTGTAAGTAAACATGAACATTCATTTTCAGGCCTGGTATTTGGTTTTTGCGGTGGGATTTTGTATAGATGCTAAAAGCActgtttttccccccaagtTTGACACTTGCGTTCAAGCAGAGAAGTGTCGCtgcattaaaaaatgacatttaatttaatataacaatGTTAATGTGATTAATGTCGTGGTTAGTATTCAAGCACACAAAGGATTCAGGTTATTGTATAAAAATTTGGGATGATCTATCCGattctaaaataataaagtatgcAAGTCGAGAACTGGTTTCAACTCGTAAAGTTTGGGCTTCAAGCATTGCGTTTGGATTTAGAGCGCTCTCAAGAGGAGTTCCACAAACctcattttgatttcattttcctGTTTATCTCGTTCCATCTTCAAGCATTTGTGCTAAAAATGGTGAATTTTGCAAGCATATTATGTGTGTCTTCTTGCCATGTTTGATTTTGTTCCCATTTTTCCCAGTTTGgtcaaaaacatttgaattaatgttaattttacatttaaattgtatatgtttgtgaaatgttatttaaaagaaaataaactaaactGGAGCTAATGTTTTGTCTCTCTCAGAAAGGGTGCTGTAAATAAATTCCATAATTACTCGAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU357951 lncRNA upstream 137009 4295308 ~ 4295516 (+) True G301923
TU357949 lncRNA upstream 137792 4294467 ~ 4294733 (+) True G301921
TU357907 lncRNA upstream 153876 4272096 ~ 4278649 (+) False cadpsa
TU357911 lncRNA upstream 263879 4138782 ~ 4168646 (+) True G301885
TU358359 lncRNA downstream 282776 4732153 ~ 4733061 (+) True G302281
TU358451 lncRNA downstream 371315 4820692 ~ 4820899 (+) True G302360
XR_004580245.1 lncRNA downstream 387775 4837152 ~ 4878375 (+) True LOC117599916
TU358624 lncRNA downstream 726193 5175570 ~ 5217425 (+) True G302530
TU358652 lncRNA downstream 977830 5427207 ~ 5471492 (+) False ptprga
XM_026935399.2 mRNA upstream 13759 4390352 ~ 4418766 (+) True prkcdb
XM_026935400.2 mRNA upstream 13759 4390352 ~ 4418766 (+) False prkcdb
XM_034314204.1 mRNA upstream 51866 4334165 ~ 4380659 (+) True fgd5a
XM_026935677.2 mRNA upstream 140157 4289572 ~ 4292368 (+) True fezf2
XM_034314381.1 mRNA upstream 140157 4289758 ~ 4292368 (+) False fezf2
XM_026935463.2 mRNA downstream 1663 4451040 ~ 4469196 (+) False LOC113539599
XM_026935461.2 mRNA downstream 1663 4451040 ~ 4462199 (+) True LOC113539599
XM_026935462.2 mRNA downstream 17682 4467059 ~ 4469196 (+) False LOC113539599
XM_026935455.2 mRNA downstream 217499 4666876 ~ 4673687 (+) True gnl3
XM_026935468.2 mRNA downstream 231653 4681030 ~ 4683551 (+) True spcs1
TU355411 other upstream 2934038 1496860 ~ 1498487 (+) False LOC117599925
TU355413 other upstream 2934898 1496860 ~ 1497627 (+) False LOC117599925
TU355179 other upstream 3567637 863338 ~ 864888 (+) False fbxo42
TU355161 other upstream 3587714 842980 ~ 844811 (+) False LOC113539702
XR_004580271.1 other upstream 3911638 518567 ~ 520887 (+) False cdkn1a
TU358141 other downstream 17700 4467077 ~ 4469174 (+) False LOC113539599
XR_003403967.2 other downstream 2214697 6664074 ~ 6779358 (+) False cpne5b
XR_004580199.1 other downstream 4052261 8501638 ~ 8558911 (+) False nfasca
XR_004580200.1 other downstream 4052261 8501638 ~ 8558788 (+) False nfasca
TU362120 other downstream 6063294 10512671 ~ 10513270 (+) True G305515

Expression Profile