RNA id: XM_034314457.1


Basic Information

Item Value
RNA id XM_034314457.1
length 3022
RNA type mRNA
GC content 0.51
exon number 19
gene id LOC113525237
representative False

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 165615 ~ 189317 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTCTGTCGTTTCCCGTTTTCTGGCCAGGAAATTTATCAGCGGAGATAAAAACTGAACtctgacactcacacacactcacacacacacactctctctctctctctgtctcacacacacacacacacacacacacaggctctagTTTAAACAGATCTATAGTTTATTAAAGTAAGGGCTTGAGGAAAGCTAACGGCGCTAACGGGAGCGCGCGCATTCATCTGAGgtTTAGCTGAAAACTGCCGAGATTCTGACTGAAAAAGGCGAAAGAAAAGTACAATGTCAGGagataagagagacagagagagaaaggaagatgATTTTGTGGAGGAAGACACCCTTTCACTGGTTGATCTTCACTGGTCTGTACCATCCTCTCCCTTTCCACATGatCTGTGTGGTAGACAgaagtctgtctctctccccccaCCACTGGCCTCTCTGCACACATCCATGGACGGAAAGTACAAAGACATTGCAGAGgaGCTGTTGGCCCGCTCCTTGGTGGACGGTGAAGTGCGGAGCGCTCCATATGAGTTTCCAGAGGACACACCCATCGAGCAGCTAGAGGAGAAACGGCACCGACTGGAGAGACAGATCAGCCAAGACAtcaaGAATCTGAGAGAACAAGATGAGGTGATGGTGGATCATGATGTTTTtaaggagaaagagacagcgatagagagagagtttcagcgcgtcACCATCTCTGGAGAGGAGAAGTGTGGGgtgccaTTTTCTGACCTGGCTGAATCAGCAGTGTGTATCATTAAGGCGTTGTTTATTAGACAGAAGTACATGTGTCTGTCAGTGCAGGATTTCTGCAGCACCACCACCCGTCTTCTGCAGCAgctctctcatgcacacacacacacagaacagcacTGTAGCTTCAACGAGGACATGCCTGATAGTGGagatgCCTTGATGCCCCCCCCAGTGTCAGAGACACATCCGTATGAGGGGCAGGAGGGTACCACGCTGCCCCCTGACCTCGGCTACAGCTGCAGCATGGAGCACGGTGTTGTGCACATCTacacctcccacacacacagtacAGAGTTGGACCTTTCGTATCCCGACCTGCAGGAGTTTATCACTGATATGAACTTTATGATGGCGCTTATCATCAATGGCCCAGTAAAGTCTTTTTGTTACCGGCGGCTGCAGTACCTCAGCTCGAAGTTCCAGATGCACATCctgctgaatgaaatgaagGAACTTGCTGCTCAGAAACAGGTTCCTCATCGAGACTTCTACAACATTcgcaagGTAGATACACACATCCATGCGTCATCCTGTATGAATCAGAAACACCTGCTGCGCTTTATAAAGCGAGCGATGAAGAAGTACCCTAACGAGGTGGTGCACATGGAGGGTGGGCGTGGCCAAACACTGACTGAGGTCTTCCAGAACATGAACCTGACGGCGTATGACCTGAGCGTCGACACACTTGACATGCATGCGgaCCGGAATACCTTTCATCGATTTGATAAGTTTAACTCAAAGTACAACCCAATTGGAGAGTCAATACTGCGAGAGATCTTCATCAAAACCGACAATCACATCCAGGGCAAATACTTTGCCCACATCGTcaaggaAGTGATGTCAGACCTAGAAGAGAGTAAGTACCAGAATGCCGAGCTGCGTCTGTCTATTTACGGACGATCGAGGGACGAGTGGGACAAACTGGCTGAATGGGCCGTCACACACTCCGTCTACTCACACAATGTCCGCTGGCTCATCCAGATCCCACGCCTGTATGATGTGTACCGCAGTAAGAGACAGTTGATGAATTTCCAGCAGATGTTGGAGAACATCTTTCTGCCACTGTTTGAGGTGACAatcagcccacacacacatccaaagCTGCACCTGTTCCTGCAGCatgtggtgggCTTTGACAGTGTTGATGATGAGTCGAAACCGGAGCACCATGTGTTCAGCTTGGACAGCCCTCGACCTGATAACTGGACTGAGGAGGAGAACCCCCCGTACTCCTATTACTTGTACTACACCTATGCTAACATGACCGTACTGAACCACCTgcgcagGAGGCGGGGCTTCCACACTTTTGTGCTGCGACCTCACTGCGGAGAGGCGGGGCCTATTCATCACCTGGTGTCTGGATTCATGCTGTCGGCCAACATCTCACACGGCCTGATGCTCAGGAAGgccCCTGTGCTGCAGTACCTGTATTACCTGGCGCAGGTGGGCATCGCCATGTCACCCCTCAGCAACAACAGTCTGTTTCTCAGTTACCATAAAAACCCGTTGCACGAGTACCTGTCACGCGGCCTCgtggtctctctctccaccGATGATCCGCTGCAGTTCCACTTCACCAAGgagcccCTGATGGAGGAGTACAGTATTGCTGCTCAAGTATGGAAGCTCAGCTCGTGCGACATGTGTGAATTAGCAAGAAACAGTGTGCTCATGAGTGGCTTCTCacacaagGTGAAGATTTCGTGGTTGGGGGCGGGGTACAGGCGTGAGGGTCCGGATGGTAATGATATCCGTCGCTCCAACGTTCCCGACATTCGTCTCGCCTTCCGACACGAGACTCTGTGTGATGAACTGCAGCTCATTACCCATGCTGCACACATACAGGGGGCGGGGCCAGAAGAGGAGACTCCACCTTCCATGGGGCTAATAAGAAATTAACATTCGATTCTTCATCCTCgtttcctttcctctcttttACATACTTCCATTTCCCTCATTGCATCTGGCTTTGGTTCCCTCCAGGTTCTGCGCTGtggatcagaaggttgtgtttcatttgcatttgtcaCGGTTAGGCTTTAACCCTTTAACCCTCAGTGCTCCAAGAGGcgctgacctctgaccccacgTGCTttccattacacacatacaggaaATACATTCTATATGTGCAAAGGACTAAAAACCCACCATTCAACTCACAGCCTTACagcctcctcttctcctctcctctccctctctctctctctctctctctctctctctctctctctcctcctctctctcctcctctcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU354887 lncRNA upstream 14979 140422 ~ 150637 (+) True G299494
TU354879 lncRNA upstream 18059 136884 ~ 147557 (+) True G299492
TU354855 lncRNA upstream 44273 120513 ~ 121343 (+) True G299473
TU354852 lncRNA upstream 53675 111016 ~ 111941 (+) True G299470
TU354850 lncRNA upstream 56537 108823 ~ 109079 (+) True G299468
TU354873 lncRNA downstream 14495 203812 ~ 204912 (+) True G299486
TU354869 lncRNA downstream 20677 209994 ~ 217409 (+) True G299482
TU354922 lncRNA downstream 46759 236076 ~ 236490 (+) True G299522
TU354931 lncRNA downstream 62406 251723 ~ 254232 (+) True G299528
TU354966 lncRNA downstream 162343 351660 ~ 354432 (+) False dram2b
XM_034314309.1 mRNA downstream 36947 226264 ~ 241666 (+) False LOC113525392
XM_034314308.1 mRNA downstream 36948 226265 ~ 241666 (+) False LOC113525392
XM_034314313.1 mRNA downstream 36949 226266 ~ 241666 (+) False LOC113525392
XM_034314311.1 mRNA downstream 36951 226268 ~ 241666 (+) False LOC113525392
XM_034314310.1 mRNA downstream 37209 226526 ~ 241666 (+) True LOC113525392
TU354973 other downstream 167445 356762 ~ 360258 (+) True dram2b
TU354975 other downstream 167445 356762 ~ 360258 (+) False dram2b
TU354977 other downstream 167445 356762 ~ 360258 (+) False dram2b
TU354978 other downstream 167445 356762 ~ 360258 (+) False dram2b
TU354979 other downstream 167445 356762 ~ 360258 (+) False dram2b

Expression Profile