RNA id: XM_034314468.1


Basic Information

Item Value
RNA id XM_034314468.1
length 4402
RNA type mRNA
GC content 0.42
exon number 8
gene id LOC113537842
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 21113434 ~ 21135134 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGGAAacgtgagacacacacacacacacacacacacaagagactGAAATGGAAGGTTGGCATTGAGGatacgtgtgtgtatgaaatcactgacacacacacacacacacacacacaccgagagagagagagagagagagagaaacaaacgTCAGAGAGGAATCGAGGAAACGGAGAGCCctgattaaagtgtgtgtgtgttttatggtgtgtgtgtgttcagtggagagagagagagtgtgtgtgtgttcagtgcagagagagagtgtgtgtgtgtgttcagtgcagTTGTAACCACACACATGGATTTTCCAGTAATTGCGCTTCTAGGAAAAGAGAAACTGGCtactgtacatcacacaccctgctgaggagagcaaaccggGACGCGacgcttctctctctctctctcacacacacacacacacacacacacacacacacacacacacacacacacacacacacagcgcgtTTTTATTAACATCATCACTACTCCTGGAGGTTTGCATCACATTTCCCAGCGACTGTCGCTCAGTGTGggttatttttctgtatttccgGGTGAGTGAAACTGCTCCGTGCGCGTGGATTCGCCGTGCGTCATGACGAGCTCACCtggagctcacacacactcagctcacacacactcagcccaCATCCAGCCCTGAgtgctgaccatcacaccatgGACAACAGCTCAGgagcaGGAGTGATCTTGTACGCTTGTTCCAGCTCGAGTCCCGACAGTCCGTCTAGCGGATATCAGACTCACTCGCCCTCGTCTCAGTCCCAGCCTTCTTCCCCAGAGGAAATCTCCTCTGACCTTCAGCACAGGAGCACGAGCAGCGACCCAAACCCCATCACAGGAACTTCCTCTTCGCCTAAACCTGTCTTCCAGTTCCCCGAACTGAGCAGCACACACGTTACATCATCAGGACAGAGCGCAAACTCACAGTCGCTCACAGGCAGGAGGTCATGCAGTGCGTTTACAATAGGGACCGGTGGTATGGTGTTGTTGTGTAAAGTGTGTGGAGACATCGCGTCGGGATTCCACTACGGAGTTCACGCATGTGAGGGATGCAaggGTTTCTTCAGACGCAGCATCCAGCAGAACATCAGCTACaagatgtgtgtgaaaaacgAAAACTGTCTGATCGTGAGAATGAACCGTAACCGCTGCCAGCACTGTCGCTTCAAGAAGTGTCTCTCCGTCGGCATGTCCAGAGACGCTGTGCGTTTTGGTCGCATCCCTAAACGTGAGAAGCAGCGCCTCCTGGATGAAATGCAGAGCTACATGAACAGCCACAACACCATGGACGTCGACTCAGCCACGCCCTCCGAAGCCCCGCCCATGGAAACCACACCCAGTCATCAGTGCCACCAGTTAGGGTCAGATGAGGTCATCAGGGCCTCGTCTCATTTCCCCGTCATTGTGAAGGAAGAGGAGAAGCTCGTGAAGATAAACAACAACGATGACAACGACAACAACGATTTCTCGCCGTCTCACGAGTCTCAGCTTCGCTCCGTTCCTCCTCACATCACGTCGACTCCATCCTGCCCCGCCCACGGCAGATTCATGCTCACTCACACTGAAAGCACATCGAAGcccacaggaagtgacatcaagAGAGAGACGCCCTGTTCCTGGAGGCCGAGTGCTGGAGCTAAAGTTCTGGCGTGTCCTCTGAATTCGTGTCCTGTGTCGCCGGCTGATCGCTCCACGCAGCAGGTCTGGGACGCTTTCTCACAGTGTTTCAGTCCCGCAGTTAAAGACGTGGTGGAATTTTCTCGCAGCATCCCGGGATTTCACACACTCAGCCAAGATGACCAGATCCGACTGCTCAAATCAGGAACCTTCCAGGTTTTGATGGTGCGATTTTGTTCGCTCTTCGACGCCAAACAGCGAACAGTGACGTTTTTAAACGGACAGACGTATCCTCTGGCGTCTTTAAGGGCACTTGGCATGGGTTCTCTGCTGGACGCCATGTTTGATTTCAGCGAGAAGCTGAGCATGCTGGGATTGGAGTCGGATGAGATGTCACTCTTCATGGCCGTAGTGCTTGTTTCTGCAGATAGCTCTGGCATTTCTGACATGGCTGCCGTGGAGAAGCTACAGGATGATTTAATCAACGCTTTGCGATCGCTTCTTGCCCAAAGGCGGCCGAACGATGGCGAGATTTTCCCCAAATTGCTCTTACGTCTTCCTGATCTACGAACGTTAAACAGCTTGCACTCAGAAAAACTTTTAGCCTTCCGTATCGACTcgtaaataagaataaataagggatataacataaaaaaaagtgctaaatTACACTGTTGCCTTGAAAAGGGAAAGAATGTAGTGACGGTGATGCCTATAAAAATTTGCATATCATTATAATTGCCTGAATATTATTACAAGAATgtatcataaatcataaatcttACTACCTTTTGTTCTTGTTGGTcagaattttaatataaaagaaCCTCGGCAGCATCTTGTTTGTGATTTAGCTTCATCTCTTGTTTTTACGTGATAGTTGTTGTTTACTCAAAATCTCTTTCAGCAGCTCAGCTACATGCTAACCGAGAATGTTTTCTAGAACATTCAGTAACAAGTTCTATGAAACTTCggctgtaacattttttttaaaacaaaaatgacgtTCGTGTAATACTCTGAAAATGTGATGATGGTTTGTGTTACGTTTTCGGATGTTGTATGCACCACCAAAAATTACGCTATTACTAAAAACTAGAAATATTGCAGCAACATTGCTGAAACGTTAGCTAAATAATGTTCACCGAAATATTTAGAAAACATTCTGCTAATGTTAAACTGTAAACTGGGCTGTTAGGTTACATTACgttagttagctagcatgtTGGTAGCCATGGAAACGACTTCTAGCAGTTGATAAACAGTAAGAAAAATGTTTGCTCTAAAACAGGCAGCTAGCgtaaatatttttaagcatttcgCACCATGCCTTTTCACGTTATTTTGGATTGAtgtctgaaaaaagaaaaaagttttgaaaGGGAAAAACTTTCTATCTTGGAcattattttaagtttttcacacaattgttaaaattgttaaaattgttCATTGTTATTAATTATCAGCACAGGCATAGCTGAATGTTTAAACCTATGtttttaacatatatattttcttttgtttgaagGAACAGTTTGGCATAAATCTCAAACGTATACAAATTTAGTCGAAAACCTGTTTGGTTTCTGAAATTCGCTTCTCCTTTGATGTTTACGTTTGATGCTGTGAAGCTAATTTAGCCTCAACGTAGCTTACATATCTGCCTCAAACATAACCAGATCTTCAGACATGCTGATCTGATGTGGTTTAGAACCCAGGGGCACTTCCTGTTATCTATAaaggcagccatcttggacaaagtgattttttttcctttagcaCAAATTGTTATCGTTCCCCTCCTTCAGTCGCCAACCTCCAAAAacttaaagtaaaattaaaccGAGGATCTATTTGCAgccttaaaaacacaaaatgcgTTATtatttagcaacattagctatGCTAGCCAGGTCCCTACACATAGCACTGTGCTGAAGTTTCCAGTTAAATTGTTAGCTCAGCTCTCAACAGCAGTAGCTATCTGAATTTAGTAGCTAGCCAAATTCagtaacaagctagctaatgtcacGCTAAGTATCAAAAGCAAGAACTTTCAAGCTAGCTGAACTTTTATTATAGAAACTAGCAGTAAGCTTTGCTAGCAAACTTGGTGGCTTTCATGTGATAGAGAGCGAAAACTCTTAGCAAATTTgcgtatttaatattttatatacgttcaggtttttttttataccaaactgtttctttgttgattttatTCTTGTATCTTTTATGATTATACTTTAAATTTTTAGACTTTAATctttaattgcttttttttttttttaaagtttatctcCACATCATTCATCACGACCTCAAATGATCACTTCACTGTACTCCGCATTTTAGGAAGCGTATTGTTTTTATCTTAACGTTTGCTGATTGCTTCTTATCACTGAATTACGACTGTTTGACCTCAGAGTGTAATTTTATCCGGAACTGAGTATCGAggaatgttttcattttgtttttttgtgtgtgttgtatatattgtatctatataatttacatttatataaaatctataaaaaggGGAAAAGAACACCTCATTTTTTAGTGTCGttactaaaataaaatctattatcTGTTATCTGTGTTGTTCTTCCACAAATTCAAGTTAAATCTGTAATATTGCAATTTTAATTCTTATGTTACTCAACTTGCctgtatattttgtaaatgtgttacTGTTATAATCTGCTACAgagttgaaaaataaaaaaataaacaagattgCCTTATCAA

Function

GO:

id name namespace
GO:0009987 cellular process biological_process
GO:0005488 binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003403815.2 lncRNA upstream 100974 21006350 ~ 21012460 (+) False LOC113538073
XR_003403816.2 lncRNA upstream 100974 21009768 ~ 21012460 (+) True LOC113538073
TU369043 lncRNA upstream 144569 20967715 ~ 20968865 (+) True G311599
TU369035 lncRNA upstream 161896 20948321 ~ 20951538 (+) True G311591
TU368903 lncRNA upstream 169805 20932678 ~ 20943629 (+) True G311483
TU369109 lncRNA downstream 15664 21150798 ~ 21155101 (+) True G311649
TU369113 lncRNA downstream 24323 21159457 ~ 21164926 (+) True G311652
TU369115 lncRNA downstream 24323 21159457 ~ 21159955 (+) False G311652
TU369114 lncRNA downstream 26339 21161473 ~ 21164926 (+) False G311652
TU369116 lncRNA downstream 26784 21161918 ~ 21164080 (+) True G311653
XM_034314335.1 mRNA upstream 66857 21033123 ~ 21046577 (+) True calcoco1b
XM_026932826.2 mRNA upstream 212023 20896980 ~ 20901411 (+) True smug1
XM_034314359.1 mRNA upstream 212023 20899115 ~ 20901411 (+) False smug1
XM_034314334.1 mRNA upstream 235027 20870652 ~ 20878407 (+) True hnrnpa1a
XM_034314163.1 mRNA upstream 252707 20831856 ~ 20860727 (+) False znf740a
XM_034314489.1 mRNA downstream 2675 21137809 ~ 21149284 (+) True faim2b
XM_034314304.1 mRNA downstream 76118 21211252 ~ 21371670 (+) True lrp1aa
XM_034314441.1 mRNA downstream 275642 21410776 ~ 21435824 (+) False alas1
XM_034314442.1 mRNA downstream 275642 21410776 ~ 21430388 (+) False alas1
XM_026932745.2 mRNA downstream 275642 21410776 ~ 21425183 (+) True alas1
XR_004580241.1 other upstream 231069 20870652 ~ 20882365 (+) False hnrnpa1a
TU368156 other upstream 1329521 19768990 ~ 19783913 (+) False vamp3
TU368157 other upstream 1329521 19768990 ~ 19783913 (+) False vamp3
TU368136 other upstream 1596275 19508255 ~ 19517159 (+) False phf13
TU367971 other upstream 2025628 19087025 ~ 19087806 (+) True G310681

Expression Profile