RNA id: XM_034314474.1


Basic Information

Item Value
RNA id XM_034314474.1
length 996
RNA type mRNA
GC content 0.65
exon number 1
gene id LOC117599924
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 1313707 ~ 1314702 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGCAGAGTGTAATTCCTACAGAGTTTATGCAGCACGTGagtggaaagaagaaaaaacaaacagagacaaAGCGTCAGACAAAGGTGTCTAAACAGCCACACCCTCACAGCCACGCCCCCACAGCAACGCCAACACAGCCACACCCACACAGCCGCGCCAACACAGCCACGCCCCCACAGCCACACAGCCCGGCCCCACAGCCCACAGCAGCACGGCCGCCAACACAGCCACAGCCCACAGCCACAGGCGCCCACAGCCACAGCCAGCCAACACAGCCGCGCCCCACAGCGGCCAGCACAGCCGAAGCTCACAGCCAGCCCTCACAGCCGCGCCAACACAGCCGCGCCCCCACAGCCGCGCCAACACAGCCACGCCCCCACAGCCGCGCCCCCACAGCCGCGCCAACACAGCAACGCcaacacagccacacccccaCAGCCACGCCAACACAGCCACACCTCTCACAGCCACGCCCCCACAGCCACGCCTCTCACAGCCACACCTCTCACAGCCACGCCCCCACAGCCACGCCTTCACAGCCACACCCTCACAGCCACACCCACACAGCCACGCCTTCACAGCCACGCCCACATAGCCATGCCCACACAGCCACGCCTCTCACAGCCACTCCCTCACAGCCACACCCACACAGCCACGCCCACACAGCCACTCCCACACAGCCACACCCTCACAGCCACACCCTCACAGCCACACCCACACAGTCACACCCTCACAGTCACGCCCTCACAGTCACGCCCTCACAGCCACACATCTCACAGCCACACCCACACAGCCACGCCCTCACAGCCACGCCCACACAGCCACACCCACACAGCCACGCCCACATAGCCACGCCCTCACAGCCACACCCACACAGCCATGCCTTCACAGCCACGCCCTCACTGCCACACCTCTCACAGCCACGCCCTTGCAGCCACGCCCATAGAGCCACTCCCTCACAGCCACGCCCACAGTCACGCCCTCACGTGcgatga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU355303 lncRNA upstream 12303 1278848 ~ 1301404 (+) True G299786
TU355290 lncRNA upstream 14798 1255066 ~ 1298909 (+) True G299773
TU355306 lncRNA upstream 41034 1272147 ~ 1272673 (+) True G299787
TU355200 lncRNA upstream 306754 965530 ~ 1006953 (+) True G299735
TU355199 lncRNA upstream 323000 954435 ~ 990707 (+) True G299734
TU355362 lncRNA downstream 41620 1356322 ~ 1356838 (+) True G299833
TU355383 lncRNA downstream 93800 1408502 ~ 1437257 (+) True G299851
TU355388 lncRNA downstream 171748 1486450 ~ 1494645 (+) False erc2
XR_004580234.1 lncRNA downstream 285991 1600693 ~ 1604586 (+) True LOC117599906
TU355401 lncRNA downstream 306098 1620800 ~ 1622584 (+) True G299862
XM_034314215.1 mRNA upstream 89418 1211519 ~ 1224289 (+) True LOC113539456
XM_034314218.1 mRNA upstream 123409 1179339 ~ 1190298 (+) True LOC113539523
XM_034314224.1 mRNA upstream 138334 1164088 ~ 1175373 (+) True LOC113539522
XM_034314216.1 mRNA upstream 162797 1139608 ~ 1150910 (+) True LOC117599896
XM_034314217.1 mRNA upstream 184159 1117850 ~ 1129548 (+) True LOC117595666
XM_026935334.2 mRNA downstream 25743 1340445 ~ 1344256 (+) True LOC113539530
XM_034314255.1 mRNA downstream 25743 1340445 ~ 1344256 (+) False LOC113539530
XM_026935715.2 mRNA downstream 47770 1362472 ~ 1372744 (+) True bap1
XM_026935386.2 mRNA downstream 61777 1376479 ~ 1444625 (+) True bsnb
XM_026935387.2 mRNA downstream 61777 1376479 ~ 1444625 (+) False bsnb
TU355179 other upstream 448819 863338 ~ 864888 (+) False fbxo42
TU355161 other upstream 468896 842980 ~ 844811 (+) False LOC113539702
XR_004580271.1 other upstream 792820 518567 ~ 520887 (+) False cdkn1a
TU354978 other upstream 953449 356762 ~ 360258 (+) False dram2b
TU355411 other downstream 182158 1496860 ~ 1498487 (+) False LOC117599925
TU355413 other downstream 182158 1496860 ~ 1497627 (+) False LOC117599925
TU358141 other downstream 3152375 4467077 ~ 4469174 (+) False LOC113539599
XR_003403967.2 other downstream 5349372 6664074 ~ 6779358 (+) False cpne5b
XR_004580199.1 other downstream 7186936 8501638 ~ 8558911 (+) False nfasca

Expression Profile