RNA id: XM_034314489.1


Basic Information

Item Value
RNA id XM_034314489.1
length 738
RNA type mRNA
GC content 0.49
exon number 11
gene id faim2b
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 21137809 ~ 21149284 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGACTCAGAAGAAGgTGTCACCTGAAGTCACGACTGTAGCTGGCAATTTGCCTCCGAGCTACGAAGAAGCCAACGCAGGATGCCCCGGTTACAGTTACAGCGATGGTGCATTTTTATGGGACGATAAAAACATCAGACGCGTTTTCGTGCGCAAGGTTTATTCGATTCTGATGCTGCAGCTGGTTGTTACTCTGGCTATTGTGTCTCTTTTCACCTTTTATGAACCGGTGAGGTTTTATATTCAGACTCATCCTGCGCTTTACTCCACGTCCAGcCTCCTGTTTCTTGTCACCTATTTAATGTTGGCTTGCTGTGGAGATTTAAGGAGGCAGTTTCCCTGGAATCTCATTCTGCTCTCAGTCTTTacactgTGCATGGCTTTCATGCTGGGTTTCATTTCCAGCTTCTACAACACGAGGTCAGTGATCTTGTGTCTCGGCATCAcggttgtggtgtgtgtgtgtgtcaccgtCTTCAGCTTTCAGACGAAGATCGACGTCACGTCGTTCCAGGGCCTTCTGCTGAACCTCTGCCTGGTGCTGCTCGTCTGCACTCTCGTCATGGGATTTGTCGTCCCGTTCGGATACttTTTGGCATTTGACACTCAGCTGTTGATGGGGAACAGACAGTACGCCCTGAGTCCTGAGGAGTACATCTTCGCCGCTCTCACTCTCTACCTcgacattgtttatattttcactCACATTTTACGGCTGTTCGGTGACAGCAACgaataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003403815.2 lncRNA upstream 125349 21006350 ~ 21012460 (+) False LOC113538073
XR_003403816.2 lncRNA upstream 125349 21009768 ~ 21012460 (+) True LOC113538073
TU369043 lncRNA upstream 168944 20967715 ~ 20968865 (+) True G311599
TU369035 lncRNA upstream 186271 20948321 ~ 20951538 (+) True G311591
TU368903 lncRNA upstream 194180 20932678 ~ 20943629 (+) True G311483
TU369109 lncRNA downstream 1514 21150798 ~ 21155101 (+) True G311649
TU369113 lncRNA downstream 10173 21159457 ~ 21164926 (+) True G311652
TU369115 lncRNA downstream 10173 21159457 ~ 21159955 (+) False G311652
TU369114 lncRNA downstream 12189 21161473 ~ 21164926 (+) False G311652
TU369116 lncRNA downstream 12634 21161918 ~ 21164080 (+) True G311653
XM_034314468.1 mRNA upstream 2675 21113434 ~ 21135134 (+) True LOC113537842
XM_034314469.1 mRNA upstream 2675 21113434 ~ 21135134 (+) False LOC113537842
XM_034314335.1 mRNA upstream 91232 21033123 ~ 21046577 (+) True calcoco1b
XM_026932826.2 mRNA upstream 236398 20896980 ~ 20901411 (+) True smug1
XM_034314359.1 mRNA upstream 236398 20899115 ~ 20901411 (+) False smug1
XM_034314304.1 mRNA downstream 61968 21211252 ~ 21371670 (+) True lrp1aa
XM_034314441.1 mRNA downstream 261492 21410776 ~ 21435824 (+) False alas1
XM_034314442.1 mRNA downstream 261492 21410776 ~ 21430388 (+) False alas1
XM_026932745.2 mRNA downstream 261492 21410776 ~ 21425183 (+) True alas1
XM_034313987.1 mRNA downstream 294015 21443299 ~ 21483333 (+) True poc1a
XR_004580241.1 other upstream 255444 20870652 ~ 20882365 (+) False hnrnpa1a
TU368156 other upstream 1353896 19768990 ~ 19783913 (+) False vamp3
TU368157 other upstream 1353896 19768990 ~ 19783913 (+) False vamp3
TU368136 other upstream 1620650 19508255 ~ 19517159 (+) False phf13
TU367971 other upstream 2050003 19087025 ~ 19087806 (+) True G310681

Expression Profile