Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_003403808.2 |
| length | 216 |
| lncRNA type | inter_gene |
| GC content | 0.38 |
| exon number | 4 |
| gene id | LOC113537967 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047614.1 |
| NCBI id | CM018560.1 |
| chromosome length | 21552800 |
| location | 15393609 ~ 15407641 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU364954 | lncRNA | upstream | 593467 | 14798973 ~ 14800142 (+) | True | G308018 |
| TU364930 | lncRNA | upstream | 612851 | 14699997 ~ 14780758 (+) | True | G307997 |
| XR_003403804.2 | lncRNA | upstream | 630435 | 14760831 ~ 14763174 (+) | True | LOC113537908 |
| TU364909 | lncRNA | upstream | 794997 | 14598393 ~ 14598612 (+) | True | G307976 |
| XR_004580186.1 | lncRNA | upstream | 802788 | 14583567 ~ 14590821 (+) | True | LOC117599878 |
| TU365380 | lncRNA | downstream | 4458 | 15412099 ~ 15413822 (+) | True | G308404 |
| TU365421 | lncRNA | downstream | 349249 | 15756890 ~ 15799890 (+) | False | dag1 |
| TU365710 | lncRNA | downstream | 466364 | 15874005 ~ 15875206 (+) | True | G308707 |
| TU365743 | lncRNA | downstream | 585754 | 15993395 ~ 15994043 (+) | True | G308737 |
| TU365764 | lncRNA | downstream | 613575 | 16021216 ~ 16022142 (+) | True | G308758 |
| XM_026932439.2 | mRNA | upstream | 4481 | 15385294 ~ 15389128 (+) | True | rbm15b |
| XM_026932414.2 | mRNA | upstream | 10661 | 15375847 ~ 15382948 (+) | True | manf |
| XM_034314016.1 | mRNA | upstream | 25479 | 15138351 ~ 15368130 (+) | True | dock3 |
| XM_034314015.1 | mRNA | upstream | 25479 | 15174773 ~ 15368130 (+) | False | dock3 |
| XM_034314022.1 | mRNA | upstream | 25479 | 15174773 ~ 15368130 (+) | False | dock3 |
| XM_026932807.2 | mRNA | downstream | 358381 | 15766022 ~ 15795427 (+) | True | dag1 |
| XM_026932810.2 | mRNA | downstream | 359010 | 15766651 ~ 15795427 (+) | False | dag1 |
| XM_026932808.2 | mRNA | downstream | 360108 | 15767749 ~ 15795427 (+) | False | dag1 |
| XM_026932784.2 | mRNA | downstream | 455815 | 15863456 ~ 15877266 (+) | True | nicn1 |
| XM_026933001.2 | mRNA | downstream | 1081720 | 16489361 ~ 16501684 (+) | False | amigo3 |
| TU364869 | other | upstream | 872462 | 14514610 ~ 14521147 (+) | False | gpd1b |
| XR_004580240.1 | other | upstream | 917224 | 14370788 ~ 14476385 (+) | False | asic1b |
| TU363207 | other | upstream | 2931073 | 12457601 ~ 12462536 (+) | True | G306480 |
| TU362774 | other | upstream | 3877796 | 11515059 ~ 11515813 (+) | True | G306103 |
| TU362623 | other | upstream | 3912509 | 11480669 ~ 11481100 (+) | True | G305955 |
| XR_004580181.1 | other | downstream | 1081720 | 16489361 ~ 16501684 (+) | False | amigo3 |
| XR_004580182.1 | other | downstream | 1081720 | 16489361 ~ 16494139 (+) | False | amigo3 |
| TU366607 | other | downstream | 1853338 | 17260979 ~ 17263663 (+) | True | LOC113537865 |
| TU367680 | other | downstream | 3279756 | 18687397 ~ 18692014 (+) | True | snrpe |
| TU367679 | other | downstream | 3279812 | 18687453 ~ 18692014 (+) | False | snrpe |
