Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_003403812.2 |
| length | 426 |
| lncRNA type | inter_gene |
| GC content | 0.54 |
| exon number | 3 |
| gene id | LOC113538055 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047614.1 |
| NCBI id | CM018560.1 |
| chromosome length | 21552800 |
| location | 18596516 ~ 18601724 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU367378 | lncRNA | upstream | 125492 | 18467803 ~ 18471024 (+) | True | G310183 |
| TU367413 | lncRNA | upstream | 151482 | 18444085 ~ 18445034 (+) | True | G310208 |
| TU367402 | lncRNA | upstream | 165926 | 18427425 ~ 18430590 (+) | True | G310201 |
| TU367268 | lncRNA | upstream | 474261 | 18122030 ~ 18122255 (+) | True | G310084 |
| TU367176 | lncRNA | upstream | 553002 | 18040882 ~ 18043514 (+) | False | G310007 |
| TU367657 | lncRNA | downstream | 654 | 18602378 ~ 18602580 (+) | True | G310416 |
| TU367661 | lncRNA | downstream | 11791 | 18613515 ~ 18615654 (+) | True | G310420 |
| TU367662 | lncRNA | downstream | 14966 | 18616690 ~ 18617001 (+) | True | G310421 |
| TU367666 | lncRNA | downstream | 29991 | 18631715 ~ 18631944 (+) | True | G310425 |
| TU367692 | lncRNA | downstream | 137242 | 18738966 ~ 18809037 (+) | True | G310446 |
| XM_026932780.2 | mRNA | upstream | 31705 | 18560022 ~ 18564811 (+) | True | pdrg1 |
| XM_026932835.2 | mRNA | upstream | 37835 | 18553402 ~ 18558681 (+) | True | si:ch211-266k22.6 |
| XM_026932836.2 | mRNA | upstream | 37835 | 18553402 ~ 18558681 (+) | False | si:ch211-266k22.6 |
| XM_034314062.1 | mRNA | upstream | 37835 | 18553402 ~ 18558681 (+) | False | si:ch211-266k22.6 |
| XM_026932440.2 | mRNA | upstream | 55790 | 18477084 ~ 18540726 (+) | True | phactr3b |
| XM_026932410.2 | mRNA | downstream | 35869 | 18637593 ~ 18645518 (+) | True | hp1bp3 |
| XM_026932543.2 | mRNA | downstream | 44987 | 18646711 ~ 18654039 (+) | False | sh2d5 |
| XM_026932545.2 | mRNA | downstream | 45020 | 18646744 ~ 18654039 (+) | False | sh2d5 |
| XM_034314340.1 | mRNA | downstream | 45054 | 18646778 ~ 18654039 (+) | True | sh2d5 |
| XM_026932544.2 | mRNA | downstream | 45091 | 18646815 ~ 18654039 (+) | False | sh2d5 |
| TU366607 | other | upstream | 1332853 | 17260979 ~ 17263663 (+) | True | LOC113537865 |
| XR_004580181.1 | other | upstream | 2094832 | 16489361 ~ 16501684 (+) | False | amigo3 |
| XR_004580182.1 | other | upstream | 2102377 | 16489361 ~ 16494139 (+) | False | amigo3 |
| TU364869 | other | upstream | 4075369 | 14514610 ~ 14521147 (+) | False | gpd1b |
| XR_004580240.1 | other | upstream | 4120131 | 14370788 ~ 14476385 (+) | False | asic1b |
| TU367680 | other | downstream | 85673 | 18687397 ~ 18692014 (+) | True | snrpe |
| TU367679 | other | downstream | 85729 | 18687453 ~ 18692014 (+) | False | snrpe |
| TU367971 | other | downstream | 485301 | 19087025 ~ 19087806 (+) | True | G310681 |
| TU368136 | other | downstream | 906531 | 19508255 ~ 19517159 (+) | False | phf13 |
| TU368156 | other | downstream | 1167266 | 19768990 ~ 19783913 (+) | False | vamp3 |
