Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004580248.1 |
| length | 531 |
| lncRNA type | inter_gene |
| GC content | 0.42 |
| exon number | 5 |
| gene id | LOC113539633 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047614.1 |
| NCBI id | CM018560.1 |
| chromosome length | 21552800 |
| location | 9004691 ~ 9016994 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU361111 | lncRNA | upstream | 66216 | 8939059 ~ 8939687 (+) | True | G304669 |
| TU361012 | lncRNA | upstream | 243650 | 8761931 ~ 8762253 (+) | True | G304600 |
| TU361008 | lncRNA | upstream | 244260 | 8756598 ~ 8761643 (+) | True | G304599 |
| TU361011 | lncRNA | upstream | 247353 | 8756598 ~ 8758550 (+) | False | G304599 |
| TU360977 | lncRNA | upstream | 287440 | 8718224 ~ 8718463 (+) | True | G304575 |
| XR_004580247.1 | lncRNA | downstream | 2606 | 9019600 ~ 9021252 (+) | True | LOC113539427 |
| XR_003403926.2 | lncRNA | downstream | 2606 | 9019600 ~ 9021252 (+) | False | LOC113539427 |
| TU361352 | lncRNA | downstream | 280375 | 9297369 ~ 9297578 (+) | True | G304898 |
| XR_003403966.2 | lncRNA | downstream | 294726 | 9311720 ~ 9312791 (+) | True | LOC113539732 |
| TU361378 | lncRNA | downstream | 343336 | 9360330 ~ 9365833 (+) | True | G304917 |
| XM_034314443.1 | mRNA | upstream | 79690 | 8918438 ~ 8926213 (+) | False | nfs1 |
| XM_026935681.2 | mRNA | upstream | 79690 | 8918439 ~ 8926213 (+) | True | nfs1 |
| XM_034314444.1 | mRNA | upstream | 79690 | 8919186 ~ 8926213 (+) | False | nfs1 |
| XM_026935434.2 | mRNA | upstream | 97372 | 8901674 ~ 8908531 (+) | False | rbm39a |
| XM_026935213.2 | mRNA | downstream | 211448 | 9228442 ~ 9237329 (+) | True | syt6b |
| XM_026935592.2 | mRNA | downstream | 299404 | 9316398 ~ 9335379 (+) | False | inavab |
| XM_026935591.2 | mRNA | downstream | 299404 | 9316398 ~ 9335379 (+) | False | inavab |
| XM_026935590.2 | mRNA | downstream | 299405 | 9316399 ~ 9335379 (+) | False | inavab |
| XM_026935587.2 | mRNA | downstream | 299406 | 9316400 ~ 9335379 (+) | False | inavab |
| XR_004580199.1 | other | upstream | 446992 | 8501638 ~ 8558911 (+) | False | nfasca |
| XR_004580200.1 | other | upstream | 447115 | 8501638 ~ 8558788 (+) | False | nfasca |
| XR_003403967.2 | other | upstream | 2226545 | 6664074 ~ 6779358 (+) | False | cpne5b |
| TU358141 | other | upstream | 4536729 | 4467077 ~ 4469174 (+) | False | LOC113539599 |
| TU355411 | other | upstream | 7507416 | 1496860 ~ 1498487 (+) | False | LOC117599925 |
| TU362120 | other | downstream | 1495677 | 10512671 ~ 10513270 (+) | True | G305515 |
| XR_004580251.1 | other | downstream | 1747280 | 10764274 ~ 10773442 (+) | False | LOC113539694 |
| XR_003403954.2 | other | downstream | 1751713 | 10768707 ~ 10773442 (+) | False | LOC113539694 |
| XR_004580252.1 | other | downstream | 1751713 | 10768707 ~ 10773442 (+) | False | LOC113539694 |
| TU362376 | other | downstream | 2094745 | 11111739 ~ 11112518 (+) | True | G305727 |
