Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_003403966.2 |
| length | 874 |
| lncRNA type | inter_gene |
| GC content | 0.47 |
| exon number | 3 |
| gene id | LOC113539732 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047614.1 |
| NCBI id | CM018560.1 |
| chromosome length | 21552800 |
| location | 9311720 ~ 9312791 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU361352 | lncRNA | upstream | 14142 | 9297369 ~ 9297578 (+) | True | G304898 |
| XR_004580247.1 | lncRNA | upstream | 290468 | 9019600 ~ 9021252 (+) | True | LOC113539427 |
| XR_003403926.2 | lncRNA | upstream | 290468 | 9019600 ~ 9021252 (+) | False | LOC113539427 |
| XR_003403942.2 | lncRNA | upstream | 294726 | 9004691 ~ 9016994 (+) | True | LOC113539633 |
| XR_004580248.1 | lncRNA | upstream | 294726 | 9005903 ~ 9016994 (+) | False | LOC113539633 |
| TU361378 | lncRNA | downstream | 47539 | 9360330 ~ 9365833 (+) | True | G304917 |
| TU361385 | lncRNA | downstream | 82784 | 9395575 ~ 9395926 (+) | True | G304924 |
| TU361387 | lncRNA | downstream | 91260 | 9404051 ~ 9404267 (+) | True | G304926 |
| TU361388 | lncRNA | downstream | 113252 | 9426043 ~ 9427519 (+) | True | G304927 |
| TU361416 | lncRNA | downstream | 223509 | 9536300 ~ 9551524 (+) | False | shisa4 |
| XM_026935213.2 | mRNA | upstream | 74391 | 9228442 ~ 9237329 (+) | True | syt6b |
| XM_034314443.1 | mRNA | upstream | 385507 | 8918438 ~ 8926213 (+) | False | nfs1 |
| XM_026935681.2 | mRNA | upstream | 385507 | 8918439 ~ 8926213 (+) | True | nfs1 |
| XM_034314444.1 | mRNA | upstream | 385507 | 8919186 ~ 8926213 (+) | False | nfs1 |
| XM_026935433.1 | mRNA | upstream | 403189 | 8902519 ~ 8908531 (+) | False | rbm39a |
| XM_026935592.2 | mRNA | downstream | 3607 | 9316398 ~ 9335379 (+) | False | inavab |
| XM_026935591.2 | mRNA | downstream | 3607 | 9316398 ~ 9335379 (+) | False | inavab |
| XM_026935590.2 | mRNA | downstream | 3608 | 9316399 ~ 9335379 (+) | False | inavab |
| XM_026935587.2 | mRNA | downstream | 3609 | 9316400 ~ 9335379 (+) | False | inavab |
| XM_026935589.2 | mRNA | downstream | 3609 | 9316400 ~ 9335379 (+) | False | inavab |
| XR_004580199.1 | other | upstream | 752809 | 8501638 ~ 8558911 (+) | False | nfasca |
| XR_004580200.1 | other | upstream | 752932 | 8501638 ~ 8558788 (+) | False | nfasca |
| XR_003403967.2 | other | upstream | 2532362 | 6664074 ~ 6779358 (+) | False | cpne5b |
| TU358141 | other | upstream | 4842546 | 4467077 ~ 4469174 (+) | False | LOC113539599 |
| TU355411 | other | upstream | 7813233 | 1496860 ~ 1498487 (+) | False | LOC117599925 |
| TU362120 | other | downstream | 1199880 | 10512671 ~ 10513270 (+) | True | G305515 |
| XR_004580251.1 | other | downstream | 1451483 | 10764274 ~ 10773442 (+) | False | LOC113539694 |
| XR_003403954.2 | other | downstream | 1455916 | 10768707 ~ 10773442 (+) | False | LOC113539694 |
| XR_004580252.1 | other | downstream | 1455916 | 10768707 ~ 10773442 (+) | False | LOC113539694 |
| TU362376 | other | downstream | 1798948 | 11111739 ~ 11112518 (+) | True | G305727 |
