RNA id: XR_004580176.1


Basic Information

Item Value
RNA id XR_004580176.1
length 1571
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id LOC117599874
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 19839421 ~ 19848284 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGAACAGGGCAGTCAAGGTAGCAGCGTATGTTCCGTTCTCACATGGCTCGCACAGCGCCTTCGTGTTTGAACCACACTGAGACACCAGACGGTTTCCTGCAGAAGAAAAACTTCATCATATACTACTGAgCAAACTTGGCTGGAGGACGAGGGGTCAAGTGTCCAGTCATCACATCCCGGTTCCACCTTGTATcccagagacagagacagcggCAATAACAGAGTCAGAACGAGCCACATCACTCGGggcACGCATTAGGGCACCTCAGCTGCAGATGTAGGTGGCACAGTCACACCCTGGCACTTCCGAGACTACACCAGCGTGCacagaacccttaaggaacctttttggatgtttgtttatttcacaaACCTCTGATGTTGCAGCTCTTGTTACTTCCATTGAATAGAGACATTAACATTATAAGCattgttaaatatgtttaacagaaacagagTCTCAATCTGCAGTTCCTTGAAGCATAATTTTTTTCAGCTAAGCTCTAATTCTGCCTTTATGAATGCAGTGTAACCTGTTACTCATGGCTTTGTATGAAGTCACTGACATTCTTTTCTTTGACACTGGTCAAAAAGAATGTTGTATGGGTTACTACAACAGAGCTGCAAGGAGTGCcgagctgtttatttattacaaacagGGTTTAAATTTGGAAATGGCCCGTCATGACTAATGAGACGTGTTGAAAAACCAAAGTGATTGTTGCTGATGTTCAGATTTTTTGACTAACCGGGTGCTTGAGCTGGTTTGGCGTTAGGTTAACTTGTGCAGGTCTTTGGTTCACGATGATGTAGACAACAACACCTCGTGATGCAGCTGAGTGCAGATCCCTGATCACGGTGCTGTCTGTGACTCTGTCTGCTACGATGGCGATCAGCTGCtcgacaaaaacaaacacaatgaagACATGTAGCATAGAAGGTGCTGGAATGCAAATTATGGTTCCCTCCGGTTCTTAAAGTCAAAACCAGCATGTACTGTGTAACAGTGGAAATAAACCAACAGTGTTGGGTTAATCTATAGTTACAAGCACAATATGTCTAGACTTTATCACTTATTGAGCGATGATTATCCTGTTAACTcctgattcattttttatttttggaaataaaatgtgtaaaatgtatttaaaaaccCAACATCAGTTATTAACACAATAAACCACATTTATGGAAATGCACATATTTAAAGATGACTTTTCTGCTGCTACTGATGGAAAATGCAAATTACAGATGAACACAATGTGACTAATCTCTATGGGATCATCTATGGGAAGATGGTAAACTGTGTGACTAATctctttttataacattttctttttatatttccaaaaatGAGTCAGTTTTCTGTACTAATACTTCAGCTTGTTGCTCTCAGATCAAAATGAACCTCATATCTGTCTTATAAATGGAATTTTTCATTAGAGAAATTGAGCTAAACCTCATAATGTTTCATGTTGGAAAGATATTAGTGTTATAGTTAATAACTAACTGTTGTAGTATAATAGTTTGACTTGAAGATAACATGACCATTAAAGGAATCATAAAACAAA

Function

GO:

id name namespace
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0006518 peptide metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process

KEGG:

id description
ko03010 Ribosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU368219 lncRNA upstream 2857 19835679 ~ 19836564 (+) True G310880
TU368221 lncRNA upstream 27686 19811438 ~ 19811735 (+) True G310882
TU368205 lncRNA upstream 122092 19717081 ~ 19717329 (+) True G310870
TU368163 lncRNA upstream 278031 19561183 ~ 19561390 (+) True G310828
TU368130 lncRNA upstream 340750 19494850 ~ 19498671 (+) False svbp
TU368220 lncRNA downstream 183 19848467 ~ 19855283 (+) False si:dkey-264d12.5
TU368245 lncRNA downstream 51594 19899878 ~ 19905766 (+) True G310905
TU368246 lncRNA downstream 51594 19899878 ~ 19905766 (+) False G310905
TU368565 lncRNA downstream 112817 19961101 ~ 19961315 (+) True G311204
TU368568 lncRNA downstream 114230 19962514 ~ 19963668 (+) True G311207
XM_026933004.2 mRNA upstream 4992 19815906 ~ 19834429 (+) True si:dkey-264d12.1
XM_034314141.1 mRNA upstream 30100 19787822 ~ 19809321 (+) True per3
XM_034314140.1 mRNA upstream 30100 19787822 ~ 19809321 (+) False per3
XM_034314142.1 mRNA upstream 32209 19787821 ~ 19807212 (+) False per3
XM_026932940.2 mRNA upstream 55496 19768983 ~ 19783925 (+) True vamp3
XM_026932462.2 mRNA downstream 5164 19853448 ~ 19868481 (+) False si:dkey-264d12.5
XM_026932461.2 mRNA downstream 8780 19857064 ~ 19868481 (+) True si:dkey-264d12.5
XM_026932463.2 mRNA downstream 8780 19857064 ~ 19868481 (+) False si:dkey-264d12.5
XM_034313999.1 mRNA downstream 35542 19883826 ~ 19894420 (+) True si:ch211-193i15.1
XM_026932696.2 mRNA downstream 156121 20004405 ~ 20022989 (+) True mmel1
TU368156 other upstream 55508 19768990 ~ 19783913 (+) False vamp3
TU368157 other upstream 55508 19768990 ~ 19783913 (+) False vamp3
TU368136 other upstream 322262 19508255 ~ 19517159 (+) False phf13
TU367971 other upstream 751615 19087025 ~ 19087806 (+) True G310681
TU367679 other upstream 1147407 18687453 ~ 18692014 (+) False snrpe
XR_004580241.1 other downstream 1022368 20870652 ~ 20882365 (+) False hnrnpa1a

Expression Profile