RNA id: XR_004580205.1


Basic Information

Item Value
RNA id XR_004580205.1
length 311
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id LOC117599893
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 11352876 ~ 11355077 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AACTTTAATGAGCCCATCCACAGAGGGAGGCGATTACTCGTGTGCCAAAATCAGTGAAAACAAACCTTGTTAAAATAAGCATCCCTATGGATATCTTCCTCATGAAGAGAGGCAGCTATACACGTACACATCAGAGATCTGCACAAAGTGGACTCCTTCTAGTCTGAAGTAAATAGAAAGAGTCAATCAGATATCACACTGGCATGACAAAAGCCTACAAGGACACAACAAAGGACTACTGGTCTCATGCCACTCCTCCTGGATGAGCCAACACTATGTCATCAATATTAGATGAGTACTGaccagtgaag

Function

GO: NA

KEGG:

id description
ko04113 Meiosis - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU362532 lncRNA upstream 35376 11317187 ~ 11317500 (+) True G305864
TU362533 lncRNA upstream 40459 11310870 ~ 11312417 (+) True G305865
TU362499 lncRNA upstream 48243 11303290 ~ 11304633 (+) True G305834
TU362498 lncRNA upstream 52163 11298322 ~ 11300713 (+) True G305833
TU362514 lncRNA upstream 77260 11273585 ~ 11275616 (+) True G305849
TU362571 lncRNA downstream 54454 11409531 ~ 11410296 (+) True G305903
TU362588 lncRNA downstream 74742 11429819 ~ 11430045 (+) True G305920
TU362777 lncRNA downstream 187856 11542933 ~ 11543138 (+) True G306106
TU362821 lncRNA downstream 293223 11648300 ~ 11661421 (+) True G306145
TU362882 lncRNA downstream 397148 11752225 ~ 11754031 (+) True G306199
XM_034314291.1 mRNA upstream 79397 11256014 ~ 11273479 (+) False cfap92
XM_026932743.2 mRNA downstream 188662 11543739 ~ 11583449 (+) True hdac11
XM_034314370.1 mRNA downstream 188662 11543739 ~ 11583449 (+) False hdac11
XM_034314328.1 mRNA downstream 253845 11608922 ~ 11671459 (+) False fbln2
XM_034314327.1 mRNA downstream 253846 11608923 ~ 11671459 (+) True fbln2
XM_034314329.1 mRNA downstream 253847 11608924 ~ 11671459 (+) False fbln2
TU362537 other upstream 26516 11325604 ~ 11326360 (+) True G305869
TU362531 other upstream 37440 11314184 ~ 11315436 (+) True G305863
TU362496 other upstream 131361 11215015 ~ 11221515 (+) False dynlrb1
TU362445 other upstream 174403 11168459 ~ 11178473 (+) False unm_sa1614
TU362376 other upstream 240358 11111739 ~ 11112518 (+) True G305727
TU362623 other downstream 125592 11480669 ~ 11481100 (+) True G305955
TU362774 other downstream 159982 11515059 ~ 11515813 (+) True G306103
TU363207 other downstream 1102524 12457601 ~ 12462536 (+) True G306480
XR_004580240.1 other downstream 3015711 14370788 ~ 14476385 (+) False asic1b
TU364869 other downstream 3159533 14514610 ~ 14521147 (+) False gpd1b

Expression Profile