RNA id: XR_004580226.1


Basic Information

Item Value
RNA id XR_004580226.1
length 1895
lncRNA type inter_gene
GC content 0.38
exon number 4
gene id LOC117599900
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 13940426 ~ 13960190 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

acaaaaaaaaaccaaaggaaGTAAAATTAGCATATTAAATGTGATACAGCAACCAGATTTAGTCTGGCTAACAGGAAATGCATTTGACTACAAGGTCAAATTCATGTGGTTGAAATCCTATCAAGAGCTAATCAAGAAACAAGACACCTGAAACAAATGATTGTAATTGGCTTCATTGAATCTTTGATGAACAAGCCTAcatgctttgtgtgttttttatgaaCTGTTACCAATCAGTATAAATCACTCAAACTCAAATCAGAAACTCAGAAGGAAAGTCAATTTACACTAACCTTATGTTCTTGATGAACtcactgcattttaatttttgcagtgtgtatataatgaTGCAAAATAACCATATTATTCTCTGCTGACTGCAACCAAAATGCTGCAAGCATTCGTTaatgaaatatgtgaaattaGCACATCCTAATAAGCACAATGTAATTTGCATAATGTTGATTGAGGTTTATTAGCTTTCATATATTGTTAGCATCCTAAGAGCAATGttccatttatccatttactGATGGACTGTTCTTGATCAAAACATCTGAACAAATGGAACACACCTTTTTTGGATTTAGGTTTAATACGAAGCACATTTGGCAGAAGGAGGGAATAGACTTCTGAGGAAGAGTGCATTCTTGGAAGCCAAAGCTCAAGATCGATTAATGGTGAAGCAGATTACATGCAGGCAGTGTGAGGGAAGGTGGATAGAAAGGGATGCACTCTTTCCTCAAACCATCACTGCATTCGCTTTTATTGTCTTCAAAGTCTGAAGCCCAACTTTCAGCAGGGTTAATTATCTTCCATGTGATTTTACTCATGATTTTGGCATTTTTGCAGTTCCTAGTTAGCATTTCCATAGTATACTCCATAACAGCGTGATGTCCTGCAAATCCCTGTCTTTTACAGACAACCCcagtaaacaaaatgaaatatattattgttatctcataaaacaaaatgttccaTAAATGCTTTTATTCCAAAGCCATCTGTCAATCAGCCATAGTGAGCAAGATCAGTTGTATCAATTGCTTAAGAGACCCTTTCCAAAGTAATCAACTTTTAGGCAGATCTGCAGTCAATAGGAGAGCATGATAACATTAGGTTAGATGCAGACATAGACTACATTGATGCAGACACCCTCAGAATACTAGACAAAGTTAGCTAGCCAATGTTTCTGCATATATGCCTATATTGCATATATTCCAATTCAAATGCTAATTAGAAAATGCTAATGCAAACATGTATTTGCAGGTGCATTTTACTTTTGCCAGCAATTGTACATTGTTGTGCACAGAAAGGGAATTGCAATTGAATTTGATTGATTACATGATTGATTAATTTTGGACCATCAGAGAGCTGATGAGACTGACCACAGGTGAATTATCTTGATTTTACTCTTCCAGTAATGACAGTAATGACAGATGACCTGACCATGAAATAAACCAGCAAAGAAAAATCAGAGAAAACacggcaggggtgaaggtatcacaagccaccgttcaaagaagacttcaagagcagaaatacagaGGCTGTACCACAAGATGCCAACCACCCAACagcagattggaattcacataCAGAGATCGGGGTtgctgtggatccagagcctatcctgagaACACAGGATGCAAGTCCGAAGAAAATTAAAGCTACCTTAGATGGCTTTCTACAAAAGAAGCAAACCCGTACACCGCAGCAAACGACTGCCCTCATGGTGTATATTCTAAACATGCTCACCGACATGAGACCACTCTCCATGGTTGATGGTGAAGGGTTTCGAGAAATGATTCGCCAGTTCAACCCCGAATACACCCTTCCATCCAGAACCCATTTCACCCACTTGATGGAAAAGAAATATGAGACGATTGTTCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU364036 lncRNA upstream 247514 13691106 ~ 13692912 (+) False ippk
TU363977 lncRNA upstream 416372 13522009 ~ 13524054 (+) True G307161
TU363969 lncRNA upstream 438595 13501466 ~ 13501831 (+) True G307154
TU363884 lncRNA upstream 589746 13350453 ~ 13350680 (+) True G307079
TU363757 lncRNA upstream 606181 13331687 ~ 13334245 (+) True G306959
TU364104 lncRNA downstream 43418 14003608 ~ 14003831 (+) True G307272
TU364094 lncRNA downstream 54972 14015162 ~ 14016394 (+) True G307262
TU364127 lncRNA downstream 91645 14051835 ~ 14058202 (+) True G307293
TU364114 lncRNA downstream 136080 14096270 ~ 14096786 (+) True G307281
TU364494 lncRNA downstream 187951 14148141 ~ 14148445 (+) True G307588
XM_026932816.2 mRNA upstream 604 13852220 ~ 13939822 (+) True stab1
XM_026932641.2 mRNA upstream 93794 13816856 ~ 13846632 (+) True nisch
XM_026932646.2 mRNA upstream 106935 13816855 ~ 13833491 (+) False nisch
XM_026932645.2 mRNA upstream 106941 13816855 ~ 13833485 (+) False nisch
XM_034314228.1 mRNA upstream 106941 13816855 ~ 13833485 (+) False nisch
XM_026932632.2 mRNA downstream 105431 14065621 ~ 14080135 (+) True rbck1
XM_026932633.2 mRNA downstream 107175 14067365 ~ 14080135 (+) False rbck1
XM_034314000.1 mRNA downstream 131745 14091935 ~ 14096019 (+) True bloc1s1
XM_026932805.2 mRNA downstream 141865 14102055 ~ 14112510 (+) False rdh5
XM_026932804.2 mRNA downstream 141865 14102055 ~ 14112510 (+) False rdh5
TU363207 other upstream 1477890 12457601 ~ 12462536 (+) True G306480
TU362774 other upstream 2424613 11515059 ~ 11515813 (+) True G306103
TU362623 other upstream 2459326 11480669 ~ 11481100 (+) True G305955
TU362537 other upstream 2614066 11325604 ~ 11326360 (+) True G305869
TU362531 other upstream 2624990 11314184 ~ 11315436 (+) True G305863
XR_004580240.1 other downstream 410598 14370788 ~ 14476385 (+) False asic1b
TU364869 other downstream 554420 14514610 ~ 14521147 (+) False gpd1b
XR_004580181.1 other downstream 2529171 16489361 ~ 16501684 (+) False amigo3
XR_004580182.1 other downstream 2529171 16489361 ~ 16494139 (+) False amigo3
TU366607 other downstream 3300789 17260979 ~ 17263663 (+) True LOC113537865

Expression Profile