Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004580245.1 |
| length | 464 |
| lncRNA type | inter_gene |
| GC content | 0.48 |
| exon number | 3 |
| gene id | LOC117599916 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047614.1 |
| NCBI id | CM018560.1 |
| chromosome length | 21552800 |
| location | 4837152 ~ 4878375 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU358451 | lncRNA | upstream | 16253 | 4820692 ~ 4820899 (+) | True | G302360 |
| TU358359 | lncRNA | upstream | 104091 | 4732153 ~ 4733061 (+) | True | G302281 |
| TU357951 | lncRNA | upstream | 541636 | 4295308 ~ 4295516 (+) | True | G301923 |
| TU357949 | lncRNA | upstream | 542419 | 4294467 ~ 4294733 (+) | True | G301921 |
| TU357907 | lncRNA | upstream | 558503 | 4272096 ~ 4278649 (+) | False | cadpsa |
| TU358624 | lncRNA | downstream | 297195 | 5175570 ~ 5217425 (+) | True | G302530 |
| TU358652 | lncRNA | downstream | 548832 | 5427207 ~ 5471492 (+) | False | ptprga |
| TU358674 | lncRNA | downstream | 644159 | 5522534 ~ 5565014 (+) | True | G302575 |
| TU358685 | lncRNA | downstream | 682238 | 5560613 ~ 5561524 (+) | True | G302586 |
| TU358684 | lncRNA | downstream | 699258 | 5577633 ~ 5580979 (+) | True | G302585 |
| XM_026935208.2 | mRNA | upstream | 96303 | 4695159 ~ 4740849 (+) | True | camk1b |
| XM_026935468.2 | mRNA | upstream | 153601 | 4681030 ~ 4683551 (+) | True | spcs1 |
| XM_026935455.2 | mRNA | upstream | 163465 | 4666876 ~ 4673687 (+) | True | gnl3 |
| XM_026935462.2 | mRNA | upstream | 367956 | 4467059 ~ 4469196 (+) | False | LOC113539599 |
| XM_026935461.2 | mRNA | upstream | 374953 | 4451040 ~ 4462199 (+) | True | LOC113539599 |
| XM_026935407.2 | mRNA | downstream | 332269 | 5210644 ~ 5471561 (+) | True | ptprga |
| XM_026935689.2 | mRNA | downstream | 595515 | 5473890 ~ 5486512 (+) | True | cse1l |
| XM_026935774.2 | mRNA | downstream | 628618 | 5506993 ~ 5510940 (+) | True | LOC113539749 |
| XM_026935775.2 | mRNA | downstream | 628618 | 5506993 ~ 5510940 (+) | False | LOC113539749 |
| XM_034314405.1 | mRNA | downstream | 636333 | 5514708 ~ 5517420 (+) | True | LOC113539468 |
| TU358141 | other | upstream | 367978 | 4467077 ~ 4469174 (+) | False | LOC113539599 |
| TU355411 | other | upstream | 3338665 | 1496860 ~ 1498487 (+) | False | LOC117599925 |
| TU355413 | other | upstream | 3339525 | 1496860 ~ 1497627 (+) | False | LOC117599925 |
| TU355179 | other | upstream | 3972264 | 863338 ~ 864888 (+) | False | fbxo42 |
| TU355161 | other | upstream | 3992341 | 842980 ~ 844811 (+) | False | LOC113539702 |
| XR_003403967.2 | other | downstream | 1785699 | 6664074 ~ 6779358 (+) | False | cpne5b |
| XR_004580199.1 | other | downstream | 3623263 | 8501638 ~ 8558911 (+) | False | nfasca |
| XR_004580200.1 | other | downstream | 3623263 | 8501638 ~ 8558788 (+) | False | nfasca |
| TU362120 | other | downstream | 5634296 | 10512671 ~ 10513270 (+) | True | G305515 |
| XR_004580251.1 | other | downstream | 5885899 | 10764274 ~ 10773442 (+) | False | LOC113539694 |
