Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004580262.1 |
| length | 661 |
| lncRNA type | inter_gene |
| GC content | 0.45 |
| exon number | 2 |
| gene id | LOC117599922 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047614.1 |
| NCBI id | CM018560.1 |
| chromosome length | 21552800 |
| location | 9700009 ~ 9704373 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU361580 | lncRNA | upstream | 8509 | 9691297 ~ 9691500 (+) | True | G305069 |
| TU361579 | lncRNA | upstream | 9815 | 9689990 ~ 9690194 (+) | True | G305068 |
| TU361530 | lncRNA | upstream | 87457 | 9606546 ~ 9612552 (+) | True | G305030 |
| TU361510 | lncRNA | upstream | 96144 | 9598993 ~ 9603865 (+) | False | LOC113539661 |
| TU361508 | lncRNA | upstream | 96231 | 9598993 ~ 9603778 (+) | False | LOC113539661 |
| TU361706 | lncRNA | downstream | 308170 | 10012543 ~ 10013541 (+) | True | G305188 |
| TU361734 | lncRNA | downstream | 330022 | 10034395 ~ 10034599 (+) | True | G305214 |
| TU361738 | lncRNA | downstream | 344851 | 10049224 ~ 10049439 (+) | True | G305218 |
| TU361748 | lncRNA | downstream | 364060 | 10068433 ~ 10068637 (+) | True | G305228 |
| TU361752 | lncRNA | downstream | 367876 | 10072249 ~ 10072468 (+) | True | G305232 |
| XM_026935607.2 | mRNA | upstream | 126720 | 9568051 ~ 9573289 (+) | True | lmod1b |
| XM_026935611.2 | mRNA | upstream | 148384 | 9536125 ~ 9551625 (+) | False | shisa4 |
| XM_026935242.2 | mRNA | upstream | 211980 | 9437233 ~ 9488029 (+) | False | ipo9 |
| XM_026935383.2 | mRNA | downstream | 391157 | 10095530 ~ 10099522 (+) | True | LOC113539559 |
| XM_026935605.2 | mRNA | downstream | 397941 | 10102314 ~ 10138886 (+) | True | gnl3l |
| XM_026935543.2 | mRNA | downstream | 576147 | 10280520 ~ 10289815 (+) | False | mon1bb |
| XM_026935542.2 | mRNA | downstream | 576163 | 10280536 ~ 10289815 (+) | True | mon1bb |
| XM_034314339.1 | mRNA | downstream | 576163 | 10280536 ~ 10289815 (+) | False | mon1bb |
| XR_004580199.1 | other | upstream | 1141098 | 8501638 ~ 8558911 (+) | False | nfasca |
| XR_004580200.1 | other | upstream | 1141221 | 8501638 ~ 8558788 (+) | False | nfasca |
| XR_003403967.2 | other | upstream | 2920651 | 6664074 ~ 6779358 (+) | False | cpne5b |
| TU358141 | other | upstream | 5230835 | 4467077 ~ 4469174 (+) | False | LOC113539599 |
| TU355411 | other | upstream | 8201522 | 1496860 ~ 1498487 (+) | False | LOC117599925 |
| TU362120 | other | downstream | 808298 | 10512671 ~ 10513270 (+) | True | G305515 |
| XR_004580251.1 | other | downstream | 1059901 | 10764274 ~ 10773442 (+) | False | LOC113539694 |
| XR_003403954.2 | other | downstream | 1064334 | 10768707 ~ 10773442 (+) | False | LOC113539694 |
| XR_004580252.1 | other | downstream | 1064334 | 10768707 ~ 10773442 (+) | False | LOC113539694 |
| TU362376 | other | downstream | 1407366 | 11111739 ~ 11112518 (+) | True | G305727 |
