RNA id: XR_004580274.1


Basic Information

Item Value
RNA id XR_004580274.1
length 535
lncRNA type inter_gene
GC content 0.50
exon number 3
gene id LOC117599928
representative False

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 18914294 ~ 18964490 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttgactttctttctttcctcccttgtttcttttctcacaACATCACTTCAGACAGTCACCGTGTCCCTCTCTATGTGGAATAAACTGCTGTACGGGGTTAGCGCTGCTAGCATGTGTAGGACTCTGCTGGAGCCGAGTATTCCTGTGAGAGTTAGCATACTTCAGAGGCTTTGAGATAACGCTGCAGTCTGGAGTATCGACGGCTCAAGCActtgaagaaagagaagaacGAGAGCCGATTCAGGGAGCAGGAAGGGCAGGTGTGCGAGTTCCTGCTGGAGAGATGGGACGCGACACTGCCATGCCATCTAGTGGAGATCCCTTTATGGCCGGCTTTCACTTCTGACACAAAGGAGCGTTTTGTTGCAGAAGTGAGGTGGTGATGCCATTTTCTTTGTCGCACAAAGAAGGCACCGTTGAAAAAAGCCTTCAATTCCCCATGGGGGAGCGAGGGCCTTTCTGACGAGGAGGGAGAGTGGGGATTGCGGAAATTGAATTCATTGCTCGAACTTTGAAAGAggaaaacagaggctgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU367817 lncRNA upstream 7671 18900260 ~ 18906623 (+) True G310547
TU367819 lncRNA upstream 7671 18904829 ~ 18906623 (+) False G310547
TU367692 lncRNA upstream 105257 18738966 ~ 18809037 (+) True G310446
TU367666 lncRNA upstream 282350 18631715 ~ 18631944 (+) True G310425
TU367662 lncRNA upstream 297293 18616690 ~ 18617001 (+) True G310421
TU367933 lncRNA downstream 100768 19060335 ~ 19066486 (+) True G310649
TU367966 lncRNA downstream 121967 19081534 ~ 19082121 (+) True G310679
TU367970 lncRNA downstream 122802 19082369 ~ 19085507 (+) True G310680
TU367980 lncRNA downstream 130815 19090382 ~ 19122056 (+) True G310686
TU367999 lncRNA downstream 150562 19110129 ~ 19113027 (+) False G310703
XM_026932834.2 mRNA upstream 110392 18790926 ~ 18803902 (+) True si:ch211-112f3.4
XM_026932736.2 mRNA upstream 172737 18715221 ~ 18741557 (+) False LOC113537968
XM_034314408.1 mRNA downstream 13395 18972962 ~ 19037668 (+) True cdk18
XM_034314409.1 mRNA downstream 20430 18979997 ~ 19037668 (+) False cdk18
XM_026932563.2 mRNA downstream 83015 19042582 ~ 19058802 (+) False mfsd4aa
XM_026932561.2 mRNA downstream 83018 19042585 ~ 19059543 (+) True mfsd4aa
XM_026932959.2 mRNA downstream 378365 19337932 ~ 19343063 (+) True c20h1orf50
TU367680 other upstream 222280 18687397 ~ 18692014 (+) True snrpe
TU367679 other upstream 222280 18687453 ~ 18692014 (+) False snrpe
TU366607 other upstream 1650631 17260979 ~ 17263663 (+) True LOC113537865
XR_004580181.1 other upstream 2412610 16489361 ~ 16501684 (+) False amigo3
TU367971 other downstream 127458 19087025 ~ 19087806 (+) True G310681
TU368136 other downstream 548688 19508255 ~ 19517159 (+) False phf13
TU368156 other downstream 809423 19768990 ~ 19783913 (+) False vamp3
TU368157 other downstream 809423 19768990 ~ 19783913 (+) False vamp3
XR_004580241.1 other downstream 1911085 20870652 ~ 20882365 (+) False hnrnpa1a

Expression Profile