RNA id: TU369781


Basic Information

Item Value
RNA id TU369781
length 3515
RNA type TUCP
GC content 0.44
exon number 4
gene id pnrc2
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 189539 ~ 193534 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTAAGTTTAAGAAACacagatttttgtgattttagcCGCTTCCTAAATAAATTAACTCTGTGCGTGTGCTTATATGGAAATTTCTATACtttttcataaacatttcaCATTATGTCATTACAGTTTAATTCCTCAAATCAGGCCTGTTGCTGCAAGATTAAAAACTCTGGCTGATTTTCCCACTTCCTCTATACGCTTttcacacttcctgttcctgcGCAGTGTCTCGCCCGTCCCTTAAACAGCGCGTGTAGTAGCGTCTATAGCGTTCTCGTCTCCGTGTTCTCGCCGCCGCCGTAGCAGCCCTACAGGAACATGGGTTTCTTCTGAGGCGACTTCCTTCCAGAAAGCAGATTAATTAAAGTCTTTGTCCCGGCGCTTGAggaagtgaattattactaaCTTCAGGGTTAATAAACAGGCTGTGAGTTCTGACCTGAAACTACGAACAGCCACTAAAGCACAATATTACAGTTACAATACagaatcctcacacacacacacacacacacacacacacgcacacacacacactgctggaaaaAGGCTTTCCTGTTAGAATTCAGCTTTCCTTAATTGTTTTCAggcttttaataattttttcctGCCTCAGACCTGTTTATTCTTGTAATTCTGTGTAATagtgagatttattttattttgttttaaacacagtCACATCATTTCTACGTGTTTCTGCTGTAATTacgagggtttttttttcaccttttgtcAGCATAAAGGAGATCATGTCTAATGGACTGGTCTCTGATTTCCTACATATAATTCTTATACACAGTGTTTATGACAATAAATCATATTAATTGCGTAACAGAATGGGATTTCTTAAAGCcctgttgtgtgtttattgtgtaagGCAGGGCTGATTTTACTCTTTTATTGCGCTTTATAAATAAGTGTTCAGGTGGAAGCAGTAGACTTGATGTGTAAGTTCTATCATGGCTGCAGTAACACAGGCTCTAATCCCACgtgatgtatttgtttttcacgTTATCAGGTGACATCCAGCACAATCAGAATGGGAGGCGGTGAGAGATACAACATTCCAGCGTCCCATCCCGATCACTCTGCCTCCAAAAAGCACCACCCCGTCGGCAAGTCCAAGCCGAGGAGCCGGAACCAGCACGCCGGCGCGTTTTCTGCGTCTCCCGGTGCTGCGACGACTCCTGAGAAACTGGCTGAGAAGAAGAGCGGCGGCTCGGTTCGCTTCTCCTACAGCGATCAGTGCTGGGGAGGAGCCGTGACTCACCTGAACAACATCCTGGTCACGCAGTGCAGCCACGCCTACGCCGGCGCCAAATTCAGCGAGCCGCCTTCCCCTAGCGTACTCCCTAAACCTCCTAGCCACTGGGTTTCCCTTCCCATGATTCCCTGCGACCGGCGCGAGATGATGGCCTTTCAGTTAAAGAGCCTCCTCAAAGTGCAGGCGTGAAAAAAATACACGACGTTAACGAACCAGCGACTTCACGCCAGGCTCCGCCCCTCCTGCAGCCTTACAGCAGGGAGGAGCGCTTAACGGAGTCGAACGAAACGCTCAACTGGATTCCCTTCTCGCTAACGTTGTGGTGTTGTTTTTTATGTTGGCCGTTAatgaaagtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagggtgaggGGACAAATCATCGCTTTACACGACGTGCATCACAATCATCACAtaactttgtttatatttactaCAGGAAGCAGCACAGCGTTAAACAGCAATAGTGTTATTATTAAAGCGCTGATACGTGCGTTTTAACTCCAGTCATCTCGCCCTCGCTTTTACTTTCACGCCTTTTTCTCGCGCACGCCTGGCGATCTCGCGCACACGAGCCTCGTCTCCGTTTATACATCAGAGAAAATCAATCTGTTTTTGGGGGAGAGAAAAATTTTGATGAAAACCAAATGcgaaagcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgagagagagatttatccTCACAATGTGGCCCACACACACCTTGTGCTTTCAGCTCCTGTACTTTTATAATTGGCGCTGTGCGCACTGCACTATGGGGGCTGAAATTCAACAAGGTGTGTAAATAAGCAGCATCtcctttgttttgctttgttccATCAATCAGAAGTGTTGAAGTTTACTGAAGTACTATAGTTTCACTTACAGCGAGTCCCCTTGGTCACGTGGTCACAGACGTACGTGTGCTGATGATCTGTAAAACGATGTTGCGCGCTGTTACGCGTGTACGGTGTAGCGTAGAGTTCCGTTCATGTCCAGTTTATTTTCGGGCCGGTTTAAAGGAGCGCTTCTAAACGCTCTTATTAAAGCAGTCATCAGGAACAGCACCGCAGTCAGCCGCGATGTCAGCACACGTTTGTCGAGTTTCCTGGATTTACACCAGAGAGGAGATTTGAACGCAATCAGTGGCGTGCGGCAGCTTTATGGCGAACGATGCGGAGGAAGGCGTACGGAGGCGAGACACAGGGGTGTTGATCATCTCGCTGTCTGACTCCGTTCGCCTGTTTGCCATGCGGCGCGTCGTTAAAGTCGCTTTGTAGCATTTAAACTGTTTACGTTTTTACAAAAGGGGCCAAAGTTTTAGACTCTTTTTGACTCGTTCTATGACTTGCACTGTGTGTCCAtgttgtgagtgtgtagtgaaacCCCCAGTTCTTATTTCCGCATTCTGTAACGCGTGTAGGCGTGTGCCACATCACATCCACGTCCGATCTTATAACTTCGTAATGATACTGTACCTAAAAATTGgaaatgatttgaaatgaattataTTGATGCTGTATGGATTATCACAGGTTTAGATGTCAGTACAAATACAATCGCATCACTTCCTCTTCAACAGGTTTACTTTATCCCTGATAAGTTTTGGTAATAACTGGATTATCGCGATTATACCGTGTATGTGATTATCGGCACATGCCTGAACACCGCGTACCTGTCCTGCACACGGCGCGTTAACGGCCAGCTGGAAGACGACTCTTTGTGCATCAGAGCCgtgtaaataatgaaatgtataaaaCCTTGTAGCATATTGTACATTAAAACGCAGGGTTGTTTTAAACCTGCCAGAAAGTATTTTTAGTAATAACACTGAATGTAAGTCACGCAGAAGACGTGGCTTGATTTGAAATgctgaaattatttttgtttaaaaaaaaaagaaaaaaagaaagaaaatatttgcCTGTAGCGTGTGGAAGTCCCTCTGCGCTGTGCCGTGTCTCCGCCAGTGATCCTGCACAggactttattttacagaacGCACAGAGCAGAGGAGAAAACAAGCTTTAAGTGcaaagatttttaaacaaaaaatatatatgtagttAAAATTTTGCAGGCTTTTACACTCACACCAGCtccatttttaaataagaaccatgtttttacaaaaaaataaaactttttttttattgattacaCTTTCagtagattttaatttaaatgactCGGTGTATCCAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU369779 lncRNA upstream 1429 187105 ~ 188110 (+) True G312175
TU369778 lncRNA upstream 1429 187163 ~ 188110 (+) False G312175
TU369805 lncRNA upstream 6497 180593 ~ 183042 (+) True G312195
TU369804 lncRNA upstream 9565 179675 ~ 179974 (+) True G312194
TU369801 lncRNA upstream 9999 177843 ~ 179540 (+) True G312193
TU369836 lncRNA downstream 220385 413619 ~ 501389 (+) False atpv0e2
TU369861 lncRNA downstream 289693 482927 ~ 483213 (+) True G312237
TU369833 lncRNA downstream 303476 496710 ~ 501389 (+) False atpv0e2
TU369834 lncRNA downstream 303476 496710 ~ 501389 (+) False atpv0e2
TU369835 lncRNA downstream 303476 496710 ~ 501389 (+) True atpv0e2
XM_034314841.1 mRNA upstream 157684 21303 ~ 31855 (+) True kpna5
XM_034314842.1 mRNA upstream 158283 21279 ~ 31256 (+) False kpna5
XM_034297765.1 mRNA downstream 24693 217927 ~ 543043 (+) True LOC117595741
XM_034297764.1 mRNA downstream 24704 217938 ~ 543043 (+) False LOC117595741
XM_034297758.1 mRNA downstream 46044 239278 ~ 272041 (+) True dop1a
XM_034297756.1 mRNA downstream 46044 239278 ~ 272041 (+) False dop1a
XM_034297760.1 mRNA downstream 46044 239278 ~ 272041 (+) False dop1a
TU369797 other upstream 13998 174238 ~ 175541 (+) True G312191
TU369775 other upstream 94614 93899 ~ 94925 (+) True G312172
TU369774 other upstream 96624 92484 ~ 92915 (+) True G312171
XR_004576918.1 other downstream 81925 275159 ~ 312728 (+) False snap91a
TU370232 other downstream 627321 820555 ~ 838522 (+) False jph1b
TU370320 other downstream 935691 1128925 ~ 1131683 (+) False paxip1
TU370328 other downstream 938649 1131883 ~ 1136020 (+) False paxip1
XR_003404390.2 other downstream 1772506 1965740 ~ 1977309 (+) True c21h5orf22

Expression Profile