RNA id: TU369782


Basic Information

Item Value
RNA id TU369782
length 688
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G312177
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 111771 ~ 112458 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAACCGCAGAGAGGAACAAcggagctcacacacactcatacacactgctgcgcgcacacacacacacacacacacacacacactgcgcgcGGAGACGTGCAGACAGAAACGGAAGCAGCTCTGAGCGGCTGGAGAATCTGCCGGTGTAATCGGTACTAAACCGCGTATCGCGGTACCGGAGCGGAAATCGCGCCTGGAGCTCGAGGAAACTTTTCCTTCAGTCTCTTTAATACAGctgtgatattaaaaaaacagaacaaagatTTTTGGTGATCTGTTGCTCGGCTCCGGCGTGGACTGTGTGGAACTGAACCCGGATTTAATAACcgtggatttttttaataattaatttttgcGCACAGAGGATCTGagcctcaggtgtgtgtgtgtgtgtgtgtgtgtgtgaacatggagGTGTTACTATGACCCCGGACTTCACCACTGTCACTGCCGCTGCAGGTCACACACtctaacttttatttattcagcattttgGGGTTTTTCGGGTTTCTGTTTGAGAGCCAGTGAGCTGAGAGTCTTTCTGGGAAATTCAGCCATGAACTTTGTGGTTTATTGGGCTCAGATATTCCTGGCAGTGCTGCTGAACGCCTCGGCTCTGAAGGTGAGTTTAATTCATTCACAGTGTacatcagtttattttattattagtttatataGAAAACTCACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU369784 lncRNA downstream 359 112817 ~ 113108 (+) True G312179
TU369786 lncRNA downstream 3674 116132 ~ 121332 (+) True LOC113525271
XR_004580289.1 lncRNA downstream 6500 118958 ~ 121478 (+) False LOC113525271
XR_004576912.1 lncRNA downstream 48047 160505 ~ 164094 (+) True LOC113525279
XR_004576911.1 lncRNA downstream 48047 160505 ~ 164094 (+) False LOC113525279
XM_034314841.1 mRNA upstream 79916 21303 ~ 31855 (+) True kpna5
XM_034314842.1 mRNA upstream 80515 21279 ~ 31256 (+) False kpna5
XM_034314843.1 mRNA upstream 80515 21293 ~ 31256 (+) False kpna5
XM_034314844.1 mRNA upstream 80515 21295 ~ 31256 (+) False kpna5
XM_034314845.1 mRNA upstream 80515 21296 ~ 31256 (+) False kpna5
XM_034314800.1 mRNA downstream 77859 190317 ~ 193534 (+) False pnrc2
XM_034297765.1 mRNA downstream 105469 217927 ~ 543043 (+) True LOC117595741
XM_034297764.1 mRNA downstream 105480 217938 ~ 543043 (+) False LOC117595741
XM_034297758.1 mRNA downstream 126820 239278 ~ 272041 (+) True dop1a
XM_034297756.1 mRNA downstream 126820 239278 ~ 272041 (+) False dop1a
TU369775 other upstream 16846 93899 ~ 94925 (+) True G312172
TU369774 other upstream 18856 92484 ~ 92915 (+) True G312171
TU369797 other downstream 61780 174238 ~ 175541 (+) True G312191
TU369780 other downstream 77081 189539 ~ 193234 (+) True pnrc2
TU369781 other downstream 77081 189539 ~ 193234 (+) False pnrc2
XR_004576918.1 other downstream 162701 275159 ~ 312728 (+) False snap91a
TU370232 other downstream 708097 820555 ~ 838522 (+) False jph1b

Expression Profile