RNA id: TU369786


Basic Information

Item Value
RNA id TU369786
length 2080
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id LOC113525271
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 116132 ~ 121478 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cacacacacacacacacgttatccCGCGCTCCTGCCCTGCTGTGCGTTAGGGTCAGATCATGATTGGCTGCTTGAGGAGACTTTGGGTTGCAGTGAAACTGaggtgtttaacacacacacactttaacacacacattaacacacacacattaacacacacacacacattaacacacacacacattaacacacacattaacacacacacacactgcctgtatTAAATAGACAGCTGAGGTGTTAAAGGTTAATGACGGCCATAACACaggcgtctgtgtgtgtgtgagagagagcgagagagagacattcagaccacacacacacacacacacacacacacacatgcactaacacacatacacacacatacacacacacacacacacacacatgcactaacacacacactccctgcaGCTGCCTCACACTTCCCTGTTCTAATCATAGCCACAGGTGTCACGCCGTCAACTGCCAGCCTCCGTGTATTTTTAGTGCTGGAAACTAAGGCTGAgtccagaaacacacacacactctcacacacacacacacacacacactctctcacacacactcacacacacacacactgatgtaccTGGTTTAattggatgagtgtgtgtgtgtgaggatcaGGTTATCTGAGAAGGCTAAATCAAATCCACTGCTTATGGAGCCAAATGCAGACTTGCTCCTGCTCATgagcacgtacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgcatggcTAAATCTTCCCTGCTGCTTATTCTGAGCACGGCTATGTGCTGTGCCGTATCGACTCGCTGCTCTCTGTGTGATTAATGTTTGtgctttaataaatgtgtttctgCTGAAAATCCTGataggtcaaaggtcagagagagagagagagaggggtgtgtgtgtgtgtgtatgtgtgtgtgttctagcaTTTGTGACAAAGCCTTTAGACTGAACATGTTCCAGTGGAACTCTAACTAAGCCATAGGCCTGGATCCAAAATGGTGccctactccctaatccctacacacTCCACAGTGCATTATGTGATAAACCGAGGagatgacgatgatgacgatgacgcCGGTCTCAGACACGCACTGAATGAAGGAATATTTAATCTCGGCACTTTTTCAACAACCTGTGgaccagaaacacacacacacacacaaacacacacacaccatgagcACGGAGAGATCATAGAAGCAACAATGTTGTGACATCGCCCcctgtacatttttaataaattaatatatgaacatatagttatatacagagagagagagagacaaagctATAAAGAAGACAATGTGTAATGCTGCTATGGAGACGAGTGAACGAGTGTCCTTCCTGCGCCACGAGACGGAGAGCTACTGTTTCACAGGTTTCTATTTAAACATGATCATGATCATCAGTGCGCGGGACTCTACTGGACTGAGATGCTCTCTGATTGGAGAGGATATGACTCCAttattgtgtaaataataaagggATATTCACCATAGGTTTCTGTTAATGTGATTCCAGTTTTCACTGAAGACATTTCcttttcataattaataataataatgactgtAATGagtaaatctgtttattttccaaAGAGAAATGCGAGCGCTGTTAGAAAACACATTAACCAAGTGTGTCTCATATCCCTGTTTCTAGTCCACTACATCTAATTTATAAAGCTAGCTTCagtattctgtgtatttaaattgatttatttatattcagtgttacgtttttgttgctgttgtggttttatttctgtCAGCGTCTCCACCAATCTgcctgattttattttcttttcccagaagaagagaagaaaagaaagaatgatagAAAGAAAGACTTCTCTGACATTCCTAAAACTACTATACAGAGAGGACAAATGATGTTTCTCAGTTAAAAACTTTGATGAATCATGAGGAATGTAAAATGTGACGTGAGGTGGTTTTCGGCTATCTCTAATAAAAAGAGACAATTTGCGACTTCTCCCAACAAAACCACCAACATTCTTCTACTTgtattaaaaca

Function

GO:

id name namespace
GO:0048583 regulation of response to stimulus biological_process

KEGG:

id description
ko04662 B cell receptor signaling pathway
ko05340 Primary immunodeficiency

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU369784 lncRNA upstream 3024 112817 ~ 113108 (+) True G312179
TU369782 lncRNA upstream 3674 111771 ~ 112458 (+) True G312177
XR_004576912.1 lncRNA downstream 39173 160505 ~ 164094 (+) True LOC113525279
XR_004576911.1 lncRNA downstream 39173 160505 ~ 164094 (+) False LOC113525279
TU369801 lncRNA downstream 56511 177843 ~ 179540 (+) True G312193
TU369802 lncRNA downstream 56511 177843 ~ 266537 (+) False G312193
TU369804 lncRNA downstream 58343 179675 ~ 179974 (+) True G312194
XM_034314841.1 mRNA upstream 84277 21303 ~ 31855 (+) True kpna5
XM_034314842.1 mRNA upstream 84876 21279 ~ 31256 (+) False kpna5
XM_034314800.1 mRNA downstream 68985 190317 ~ 193534 (+) False pnrc2
XM_034297765.1 mRNA downstream 96595 217927 ~ 543043 (+) True LOC117595741
XM_034297764.1 mRNA downstream 96606 217938 ~ 543043 (+) False LOC117595741
XM_034297758.1 mRNA downstream 117946 239278 ~ 272041 (+) True dop1a
XM_034297756.1 mRNA downstream 117946 239278 ~ 272041 (+) False dop1a
TU369775 other upstream 21207 93899 ~ 94925 (+) True G312172
TU369774 other upstream 23217 92484 ~ 92915 (+) True G312171
TU369797 other downstream 52906 174238 ~ 175541 (+) True G312191
TU369780 other downstream 68207 189539 ~ 193234 (+) True pnrc2
TU369781 other downstream 68207 189539 ~ 193234 (+) False pnrc2
XR_004576918.1 other downstream 153827 275159 ~ 312728 (+) False snap91a
TU370232 other downstream 699223 820555 ~ 838522 (+) False jph1b

Expression Profile