RNA id: TU369801


Basic Information

Item Value
RNA id TU369801
length 470
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G312193
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 177843 ~ 266537 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACGAGAAGACCACCGAACCTTTattcttttcaaaaaaaaaaaaaaaaataaaagagtaaggaaaataaaaatatccacaTCCCTCAggtttgaaacaggaagtagaagAGTTGAGAGTGTTAGAGGAGCGGCAGATTCAGAAACATTCACGCTTTcacttttctgtctttattttaaaaagagggaagagagagagttttCATCAGAACAGCGTTTATTCACGACTGCTCAGGAGCCGGGCTTCAGGAAGAGAAACGACAGACAGGGTTAATGTGGAGAGAGAACCCAAAGCACCCGAGcagtgtttaaaatgaacaagggattagagagagagagagagagagagagagagagagagatgatactGCAGCAACCACGCTGTTGGCCTGTAGTCGTCCATCTGCGAACTTCAAGATACgtAGCTGGCAGGTCGAGCTCCGTACCGCCTCATGATCTGATCCTGTGTGAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004576912.1 lncRNA upstream 13749 160505 ~ 164094 (+) True LOC113525279
XR_004576911.1 lncRNA upstream 13749 160505 ~ 164094 (+) False LOC113525279
XR_004580289.1 lncRNA upstream 56365 118958 ~ 121478 (+) False LOC113525271
TU369786 lncRNA upstream 56511 116132 ~ 121332 (+) True LOC113525271
TU369784 lncRNA upstream 64735 112817 ~ 113108 (+) True G312179
TU369804 lncRNA downstream 135 179675 ~ 179974 (+) True G312194
TU369805 lncRNA downstream 1053 180593 ~ 183042 (+) True G312195
TU369779 lncRNA downstream 7565 187105 ~ 188110 (+) True G312175
TU369778 lncRNA downstream 7623 187163 ~ 188110 (+) False G312175
TU369836 lncRNA downstream 234079 413619 ~ 501389 (+) False atpv0e2
XM_034314841.1 mRNA upstream 145988 21303 ~ 31855 (+) True kpna5
XM_034314842.1 mRNA upstream 146587 21279 ~ 31256 (+) False kpna5
XM_034314800.1 mRNA downstream 10777 190317 ~ 193534 (+) False pnrc2
XM_034297765.1 mRNA downstream 38387 217927 ~ 543043 (+) True LOC117595741
XM_034297764.1 mRNA downstream 38398 217938 ~ 543043 (+) False LOC117595741
XM_034297758.1 mRNA downstream 59738 239278 ~ 272041 (+) True dop1a
XM_034297756.1 mRNA downstream 59738 239278 ~ 272041 (+) False dop1a
TU369797 other upstream 2302 174238 ~ 175541 (+) True G312191
TU369775 other upstream 82918 93899 ~ 94925 (+) True G312172
TU369774 other upstream 84928 92484 ~ 92915 (+) True G312171
TU369780 other downstream 9999 189539 ~ 193234 (+) True pnrc2
TU369781 other downstream 9999 189539 ~ 193234 (+) False pnrc2
XR_004576918.1 other downstream 95619 275159 ~ 312728 (+) False snap91a
TU370232 other downstream 641015 820555 ~ 838522 (+) False jph1b
TU370320 other downstream 949385 1128925 ~ 1131683 (+) False paxip1

Expression Profile