Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU369805 |
| length | 484 |
| lncRNA type | inter_gene |
| GC content | 0.61 |
| exon number | 2 |
| gene id | G312195 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047615.1 |
| NCBI id | CM018561.1 |
| chromosome length | 21248730 |
| location | 180593 ~ 183042 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU369804 | lncRNA | upstream | 619 | 179675 ~ 179974 (+) | True | G312194 |
| TU369801 | lncRNA | upstream | 1053 | 177843 ~ 179540 (+) | True | G312193 |
| XR_004576912.1 | lncRNA | upstream | 16499 | 160505 ~ 164094 (+) | True | LOC113525279 |
| XR_004576911.1 | lncRNA | upstream | 16499 | 160505 ~ 164094 (+) | False | LOC113525279 |
| XR_004580289.1 | lncRNA | upstream | 59115 | 118958 ~ 121478 (+) | False | LOC113525271 |
| TU369779 | lncRNA | downstream | 4063 | 187105 ~ 188110 (+) | True | G312175 |
| TU369778 | lncRNA | downstream | 4121 | 187163 ~ 188110 (+) | False | G312175 |
| TU369836 | lncRNA | downstream | 230577 | 413619 ~ 501389 (+) | False | atpv0e2 |
| TU369861 | lncRNA | downstream | 299885 | 482927 ~ 483213 (+) | True | G312237 |
| TU369833 | lncRNA | downstream | 313668 | 496710 ~ 501389 (+) | False | atpv0e2 |
| XM_034314841.1 | mRNA | upstream | 148738 | 21303 ~ 31855 (+) | True | kpna5 |
| XM_034314842.1 | mRNA | upstream | 149337 | 21279 ~ 31256 (+) | False | kpna5 |
| XM_034314800.1 | mRNA | downstream | 7275 | 190317 ~ 193534 (+) | False | pnrc2 |
| XM_034297765.1 | mRNA | downstream | 34885 | 217927 ~ 543043 (+) | True | LOC117595741 |
| XM_034297764.1 | mRNA | downstream | 34896 | 217938 ~ 543043 (+) | False | LOC117595741 |
| XM_034297758.1 | mRNA | downstream | 56236 | 239278 ~ 272041 (+) | True | dop1a |
| XM_034297756.1 | mRNA | downstream | 56236 | 239278 ~ 272041 (+) | False | dop1a |
| TU369797 | other | upstream | 5052 | 174238 ~ 175541 (+) | True | G312191 |
| TU369775 | other | upstream | 85668 | 93899 ~ 94925 (+) | True | G312172 |
| TU369774 | other | upstream | 87678 | 92484 ~ 92915 (+) | True | G312171 |
| TU369780 | other | downstream | 6497 | 189539 ~ 193234 (+) | True | pnrc2 |
| TU369781 | other | downstream | 6497 | 189539 ~ 193234 (+) | False | pnrc2 |
| XR_004576918.1 | other | downstream | 92117 | 275159 ~ 312728 (+) | False | snap91a |
| TU370232 | other | downstream | 637513 | 820555 ~ 838522 (+) | False | jph1b |
| TU370320 | other | downstream | 945883 | 1128925 ~ 1131683 (+) | False | paxip1 |
