RNA id: TU369841


Basic Information

Item Value
RNA id TU369841
length 2659
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G312221
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 574241 ~ 576923 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCCGGGTTTCTCTCCAGTTCCTTCCTTACAGCGTTATCCTTTGCCTCTCGGTTGCAGTATcgtattctttccattttttaataatggatttaatattGTTGCACTGTAGAACGTTCAAAGTTTGAAATATTTCTTTCTATAACCAAATCTTTGTCCTGGATTTCTCCAAAACTTTGTTTGGATCGCTCCGtgttcttcatgatgctgtgtgtttaggttctctaacaaactctgggttcctccaggaacaggtgtatttatacgTGTTTATCAcgtgacactttaattacacacaggtcGACTCTGTTCAACTAATTATGACACTTCTGATGGAAACTGGACCTGGAGTTAATTTAGGGGGTGAACACTTATGCACTCATAACTTGtaagatttatttgtaaatagtttTGTAAACTATATCGATTTCCTCACATCAGTATTttgggttattttgtgtagattcatgacataaaatcCCATTTAAACCCAGTGTAATAATTGAATGCTACACAACGTGAAAACATtcaggggggtgaatacttacgcaaggtGCTTTTTTGGACTTGTTGCTAAGGTTCACACACTTGTATGATTCTCACACGCACTCGGCTTCAGGATGATTTAGGTCAAAGCATCATTAGGACCGTTTAAAGGCGTGTGGTTTGGGGCCGAACCAAACGGTGAATAATAAGTTCAGTCTCTCTTGGGGGAAAATGGAGGTCCAAGTAAAAACACCCCGTTCCCCGGGGGATGTAGAGCGGACACGCCCACTGCGGGAGGCGGCGCTCGCCCCTTTTATGTCCTGTTACACTCCACCATCTGGCCCTCGACGCCTCTGATTCAGAGAACATGTGGGAATAACGACTTCACCGCCTTTTTTCTAACGGCCCTCTCCGTCCGGCCTGCGCGTGGAGCTCCGTTCAGTTCTGttaataatcagtgtgtgttgatAACGacatcccataatgcacctctCTGTGCAGGGGGAAGAACATACACATTAACTACACATTAACTGGTGTTTGTCAGAATGCAGATGAAACCAACCgacaacatttaatttaatcttgTAGCTTGTACATTATGCTTTTTAAAGTTACACTCGTTTATTATATAATCATGTTATATTACGCTTAAAATGACCCAGAACTTTTTAATTACGTGTAAAAGTTTCATAGAATTTGATCACAGCGCTAAATGTtcatacataatttaaaaaatggccacaatgaaatgttcatttaaataaaacatgattataCACAATCCTAatctaaattaaacatttacaaatataacatttaattatttagctaaaaATGTGGTTTATATTAAGCAcccaaaaaatatattatgttaatttattttggCCTTAAtacactttaattaattaatcaatttatttttattattattattattattattattattattatatggCCAGAAGGTGGCAGTAACACACAGATGGAGGTGAGGAGGAGTGTGAGGGTGCAGGTACAGTGAATAAagaacacactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtataagtgcgGAAGCATTAAGGCATGGTTTTATTGCATCGTGTTAGCCGGAGAACAGACGAGGAACCACATAAACATCTCAGAGCTTCAGTGTGAGATTACATTTCCATATTGTGATAATCACCTCAAACCTTTTAcatgaaagagacagaaattcagtaaaacaacagaaaataacagaaaatgacAGTAAACAGTCGAGTGTCTGAAACAGACACATCATTAACCAGAGTGAAGCTCCACTGACTCACACTTGCTTTTACCCTCAATGTTCACACACCTTTATATCCTGCATTAAACTGACTCACCTGGTCGACCTGTCCTCCGCTCTgagctttctttttctcccctgtttcattagtaacactttCGCTCTGTCTCTCAGAGTGACCCAGACACAGGAACATTCTGGCCAGAAACTAAATTCACACACTGTTATGCACTTCTctctctggaatattctgtggggtttaaactgtttgtgtttatgacgttatccagagcgactgatagaagagctttagagtctcgatcagaaacacgTCCTCATCGTCAGTTCCTCGCTCAcagctttagttcctacctgcgaTTAGCTCCTGTTTACTGTTCGACGCAGAAACAAAAgaactgtggtttcatcttatcctgtcataagAACTCTCATTATCAtgaaatgtgtatagagatattatgaagaaaaataaagtgtggGAAAAAGTAGCAGAGAAGCAGTAGCAGTCTCTGGTGACACCACAGTCCCGACTACAGCTGGAACAGACGCGTCGTTATACACAATAGTGTGATATAAAGTGTAATATCAGCACAAATCTTTCTACAAGGAGCAAAGTATACGCAACTGGTGCAGCCGagcctccatctgtctctccacctctctgtctctctctctctgcctgtcattctgtctctctgcctatctgtctctctgcctgtctgtctctttgtctgtctctctctctctctgtctctctgcctgtctgtctgtctctctctctgtctgtctctctgtctgtctgtctgtctctctctctgcctgtctgtctcgctgtttgtctgtctctctctctctctgtctctctgtctgtctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU369836 lncRNA upstream 72852 413619 ~ 501389 (+) False atpv0e2
TU369833 lncRNA upstream 72852 496710 ~ 501389 (+) False atpv0e2
TU369834 lncRNA upstream 72852 496710 ~ 501389 (+) False atpv0e2
TU369835 lncRNA upstream 72852 496710 ~ 501389 (+) True atpv0e2
TU369838 lncRNA upstream 72852 496710 ~ 501389 (+) False atpv0e2
TU369918 lncRNA downstream 134571 711494 ~ 712297 (+) True G312280
TU369914 lncRNA downstream 137098 714021 ~ 717291 (+) False LOC113543349
TU369915 lncRNA downstream 138716 715639 ~ 759328 (+) True G312277
TU369922 lncRNA downstream 162540 739463 ~ 743129 (+) True G312283
TU370234 lncRNA downstream 244339 821262 ~ 822746 (+) True G312517
XM_034297686.1 mRNA upstream 13104 545670 ~ 561137 (+) True LOC113543345
XM_034297765.1 mRNA upstream 31198 217927 ~ 543043 (+) True LOC117595741
XM_034297764.1 mRNA upstream 31198 217938 ~ 543043 (+) False LOC117595741
XM_034297762.1 mRNA upstream 52215 505627 ~ 522026 (+) True LOC113543344
XM_034297763.1 mRNA upstream 52215 505627 ~ 522026 (+) False LOC113543344
XM_034314814.1 mRNA downstream 39795 616718 ~ 677782 (+) True mre11a
XM_034314815.1 mRNA downstream 39828 616751 ~ 677782 (+) False mre11a
XM_034314816.1 mRNA downstream 39850 616773 ~ 677782 (+) False mre11a
XM_026941468.2 mRNA downstream 106883 683806 ~ 694338 (+) True LOC113543348
XM_034297687.1 mRNA downstream 127855 704778 ~ 717278 (+) True LOC113543349
XR_004576918.1 other upstream 261513 275159 ~ 312728 (+) False snap91a
TU369780 other upstream 381007 189539 ~ 193234 (+) True pnrc2
TU369781 other upstream 381007 189539 ~ 193234 (+) False pnrc2
TU369797 other upstream 398700 174238 ~ 175541 (+) True G312191
TU369775 other upstream 479316 93899 ~ 94925 (+) True G312172
TU370232 other downstream 243632 820555 ~ 838522 (+) False jph1b
TU370320 other downstream 552002 1128925 ~ 1131683 (+) False paxip1
TU370328 other downstream 554960 1131883 ~ 1136020 (+) False paxip1
XR_003404390.2 other downstream 1388817 1965740 ~ 1977309 (+) True c21h5orf22
XR_003404395.2 other downstream 1556291 2133214 ~ 2143313 (+) False tgs1

Expression Profile