RNA id: TU369918


Basic Information

Item Value
RNA id TU369918
length 502
lncRNA type intronic
GC content 0.38
exon number 2
gene id G312280
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 711494 ~ 712297 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCAGACAGAGCTGCTCGTCCTCCGCTTATACATCGCTGTTTCATTatcataattaaatgatttgttttatttgtcttcatttatgggTTTGACTTGgctcgctttctttatttttatgttctttaattaaagaataaaataaagcggctggttttgagtaaatgttgtggatggagctctgagtccctgagcgAGGAACTGACGATGAGGAcgtgtttctgatcgagactctaaagctcttctatcagtcgctctggataaaagcgtctgctaaacgctgcaaacgtcataaacacaaacagtttaaactccacagaatattccagagagaaaagtgcagtaatccctgCAGATTATAGGATCTGAAGTCCATCAGGTCGAGGTTTACATCAGTTAGTCTCCTTATGTGTAAagttacacacactcaggagcacgattaggatacaaacattttttcctctaatttacaggattttctcttttgtagtagttttatttcttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU369841 lncRNA upstream 134571 574241 ~ 576923 (+) True G312221
TU369833 lncRNA upstream 210105 496710 ~ 501389 (+) False atpv0e2
TU369834 lncRNA upstream 210105 496710 ~ 501389 (+) False atpv0e2
TU369835 lncRNA upstream 210105 496710 ~ 501389 (+) True atpv0e2
TU369838 lncRNA upstream 210105 496710 ~ 501389 (+) False atpv0e2
TU369914 lncRNA downstream 1724 714021 ~ 717291 (+) False LOC113543349
TU369915 lncRNA downstream 3342 715639 ~ 759328 (+) True G312277
TU369922 lncRNA downstream 27166 739463 ~ 743129 (+) True G312283
TU370234 lncRNA downstream 108965 821262 ~ 822746 (+) True G312517
TU370220 lncRNA downstream 150090 862387 ~ 866721 (+) True G312509
XM_026941468.2 mRNA upstream 17156 683806 ~ 694338 (+) True LOC113543348
XM_034314814.1 mRNA upstream 33712 616718 ~ 677782 (+) True mre11a
XM_034314815.1 mRNA upstream 33712 616751 ~ 677782 (+) False mre11a
XM_034314816.1 mRNA upstream 33712 616773 ~ 677782 (+) False mre11a
XM_034297686.1 mRNA upstream 150357 545670 ~ 561137 (+) True LOC113543345
XM_026941295.2 mRNA downstream 11154 723451 ~ 727865 (+) True cbln2a
XM_026941377.2 mRNA downstream 108233 820530 ~ 847017 (+) True jph1b
XM_026941381.2 mRNA downstream 156424 868721 ~ 873766 (+) True rdh10b
XM_026940929.2 mRNA downstream 185761 898058 ~ 901624 (+) True tmem70
XM_034314625.1 mRNA downstream 185921 898218 ~ 901624 (+) False tmem70
XR_004576918.1 other upstream 398766 275159 ~ 312728 (+) False snap91a
TU369780 other upstream 518260 189539 ~ 193234 (+) True pnrc2
TU369781 other upstream 518260 189539 ~ 193234 (+) False pnrc2
TU369797 other upstream 535953 174238 ~ 175541 (+) True G312191
TU369775 other upstream 616569 93899 ~ 94925 (+) True G312172
TU370232 other downstream 108258 820555 ~ 838522 (+) False jph1b
TU370320 other downstream 416628 1128925 ~ 1131683 (+) False paxip1
TU370328 other downstream 419586 1131883 ~ 1136020 (+) False paxip1
XR_003404390.2 other downstream 1253443 1965740 ~ 1977309 (+) True c21h5orf22
XR_003404395.2 other downstream 1420917 2133214 ~ 2143313 (+) False tgs1

Expression Profile