RNA id: TU370257


Basic Information

Item Value
RNA id TU370257
length 2661
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id G312534
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 883404 ~ 886114 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACACGTTATCAAATTAAAAGTTACTAAACCATAAAGCCCGAGCCCAAAAAATCATACTGAAATCTctgaaatcagaaaacacacacagtcactgagCTCTGATCGAATCCAGTCCTCAGTCTTCAGCCGGGGCTTTAAACACCAGAGATTAACTACCggaaaaagaggaataaaaacagccTTCGTCACCCAGCACTGCGATATTTTACCTATTCCACGTGAAACAGCTCGAGTGCGTACACAACCTGACGTAACAGCAGAAGAGACGGATCGAGTGGTTAGTTTCATTTTACCTCCCAAACAAAGTCAGTTCTTCTTTAAAACaccatgaagaagaagaagaagaagaagaagaagaagagtgtgTTTTAGTGGCATTGAGCTGTGAGTCCTGCAGTCCTTATGATCAGgaatgttttactttgtttttatttttaaaatcgcGCCAGTTgccttctttattattttaaaacgaGAAACCTTTCTGCTCAGAAATGCTGTTTATGTAATCCGCCTCCTCCTGAATATCAGTACTGGCTATAATTTCAATAATATATCGCaaacagttgtataaatgattaTGGGAACATGTCCGGATCCAGCTGAATAAAGATTTCTACAATAAGACGCTAAAATGGAAAGTGTCTGCTTTCTAATAAATGCTGCTGATGAGCCGAGGCGTCTTGTTTTTCTGCGTAATTTTCGctacttaaaggaaaaatccaccctgaacaagtCAGTATTTATAATCAACATGCTGCAAAAGAtttattacagttacagttttttaGGTTAAACGTCTTTCATGGACATCAAGGTCGCTCTATTCTATCTCCGTTTctctacattacccacaatgccgtctGACTACGTCCTGATAGCGGtctctctacctaaagagagcgatgcagcggcgctttagtactttaatctgtccagctctctcacctcctcgtcTGTATCTCACTCTGCGCAAAGAGATccgcttccaaagcttcaactttcacgcTAATACCGCcgtcaacatcaacatcaacgcCATCGCCATCATCATCTCCGCAGATCGCTCAcatagctgcactgcattctgggataCAGCATTTGCTCCAGTGTCTTGcttcactactactactgttagcGGATTTCTCACGTATACGACgtcgctggaaaatggtgagtgagttTTATTAAACGCAAATGTGACTGCgccctgtgacatcagagcgACACACAGCAAtgacaaattagcaccagaatcgccAAACATGTcgcaaatatataaatatatatatatatatatatatatatatatatatatattcagtataaacataatgtaatgagtttcagggtggagttttacTTTAAGTTCTGCACTGGAGTTTCGATGGTCGTCGAAAACAACCTCCGAAACAATCACTTTCAGCTACAAATATAGCATTAAACAGCTGGAGGTGGGGCTTAAAGGGGCGGAGTCACAccaaaatagatagataaataaaaaaacaaacacaaaactgaGACATCAAAGCTCTCGACTGCATTCAGGATAAGAaggtaattaatttttttttttgccggaGTGAGTCGTAATTTTATCTCCCGAGCTAAAACAAAGTTTTCGTTCCGTTTTATATTTACGCACCGAGACGGACTGCCTTTACATTCCTTTAACATGCTTAAATAATTATTGCACAAAATGTCAACCTgaaaaggctttaaaaaaaaaataacaaaaacaaaaacaaacaaaacaaaaaaaacaaccacaacTACCGCTTGTCTGCTTATACTGTGATGGTGCAAGtcctgggggcggggcttattcCGAAACCGTTTCTCAACTCTTCTCGTCACCGATGAGACGCTCGACTGAAACCGAGGAGCCAACAAGGTGAGAGCTTGTGGGCGTGGTCTTTTCATTGCCATGACGACGATACGAGGAACTCGTTAGCTAAATGTAGctaaaataatttactttttaaaggCCATCGTTCGCCAAGTTAAATTTGTGATGTGAAGTCCTCAGGTATGACGATATATTTCAGACACTTCACATCTAGTTTGgaagattattattaaaaaataaatataactgtGAATTACTGGTCCGAGGAACGAACTGCACGGAAGCCAtattgctaatgctaacgctaatgctaatgcGCAGTTAGAGGTTCAGAATAATTAGCGAAATGTGATGCTTTTGTACTGTGGATGGACAACCGGGTGATAAAACGTGTCCCCAAAGCCGAACGGGTTTCTCTCTAACAGGTTGCTCGTGAGTAAACTCGCACAGTAAGCTAATCCGGAACCGGTGGAACCGCACGCCGCGTCTTTACAAGGTCTAACGGTTCCCAGAACCAGCACCGGCTCCACCGCGTCAGTGGAAAAGAGGTAAAAAGTGATCCAACGCTAATCCTGCCATTTATAAACCCTCTCCTTACGCGCATCATCCTCGCATCATCCTCGCTTCTCAACGTGCACATGTGGAGTTTTACATTCCTGGAGTTtcgtcaggtttttttttcagcctgctGAAGTGTAACGCTCCCAATACGCCGTTTCTCCAAAGAGGTCCGCTCAGTCCCGGGACTGAAGATCCGTAAAAGTGCAGGTGTACCGTCCGTGAGCCTGTTTCCAACTGGAGTACGCCAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU370250 lncRNA upstream 7524 875663 ~ 875880 (+) True G312531
TU370220 lncRNA upstream 16683 862387 ~ 866721 (+) True G312509
TU370234 lncRNA upstream 60658 821262 ~ 822746 (+) True G312517
TU369915 lncRNA upstream 124076 715639 ~ 759328 (+) True G312277
TU369922 lncRNA upstream 140275 739463 ~ 743129 (+) True G312283
TU370266 lncRNA downstream 20120 906234 ~ 906446 (+) True G312540
XR_004580327.1 lncRNA downstream 90507 976621 ~ 980051 (+) True LOC117599981
XR_004580295.1 lncRNA downstream 203744 1089858 ~ 1104324 (+) True LOC117599954
XR_004580318.1 lncRNA downstream 477262 1363376 ~ 1370691 (+) True LOC117599969
TU370578 lncRNA downstream 478122 1364236 ~ 1368869 (+) False LOC117599969
XM_026941381.2 mRNA upstream 9638 868721 ~ 873766 (+) True rdh10b
XM_026941377.2 mRNA upstream 36387 820530 ~ 847017 (+) True jph1b
XM_026941295.2 mRNA upstream 155539 723451 ~ 727865 (+) True cbln2a
XM_034297687.1 mRNA upstream 166126 704778 ~ 717278 (+) True LOC113543349
XM_026941468.2 mRNA upstream 189066 683806 ~ 694338 (+) True LOC113543348
XM_026940929.2 mRNA downstream 11944 898058 ~ 901624 (+) True tmem70
XM_034314625.1 mRNA downstream 12104 898218 ~ 901624 (+) False tmem70
XM_026941207.2 mRNA downstream 60678 946792 ~ 965617 (+) True trpa1a
XM_026940965.2 mRNA downstream 117795 1003909 ~ 1012192 (+) True shhb
XM_026940830.2 mRNA downstream 167754 1053868 ~ 1066467 (+) True cnpy1
TU370232 other upstream 44882 820555 ~ 838522 (+) False jph1b
XR_004576918.1 other upstream 570676 275159 ~ 312728 (+) False snap91a
TU369780 other upstream 690170 189539 ~ 193234 (+) True pnrc2
TU369781 other upstream 690170 189539 ~ 193234 (+) False pnrc2
TU369797 other upstream 707863 174238 ~ 175541 (+) True G312191
TU370320 other downstream 242811 1128925 ~ 1131683 (+) False paxip1
TU370328 other downstream 245769 1131883 ~ 1136020 (+) False paxip1
XR_003404390.2 other downstream 1079626 1965740 ~ 1977309 (+) True c21h5orf22
XR_003404395.2 other downstream 1247100 2133214 ~ 2143313 (+) False tgs1
TU370902 other downstream 1295865 2181979 ~ 2185677 (+) True G313112

Expression Profile