RNA id: TU370266


Basic Information

Item Value
RNA id TU370266
length 213
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G312540
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 906234 ~ 906446 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGGCCAGTTTCAGGATCCTGAGTATTCTCATGATCCGAAATATCTGGACCACCCTGCGTACGTTCTGGAACTGGAGAACGCTCTTATTGGACTCTGTGAGAAATATGGTGATATAGTAGGGAAGTATGGCCAATAGATCGATGACATTCAGAGGGCCTTTGAAGAACTTCCACTTGTTGGGCGAAGACAGAAACCGCAGAAGGTACTCCATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU370257 lncRNA upstream 20120 883404 ~ 886114 (+) True G312534
TU370250 lncRNA upstream 30354 875663 ~ 875880 (+) True G312531
TU370220 lncRNA upstream 39513 862387 ~ 866721 (+) True G312509
TU370234 lncRNA upstream 83488 821262 ~ 822746 (+) True G312517
TU369915 lncRNA upstream 146906 715639 ~ 759328 (+) True G312277
XR_004580327.1 lncRNA downstream 70175 976621 ~ 980051 (+) True LOC117599981
XR_004580295.1 lncRNA downstream 183412 1089858 ~ 1104324 (+) True LOC117599954
XR_004580318.1 lncRNA downstream 456930 1363376 ~ 1370691 (+) True LOC117599969
TU370578 lncRNA downstream 457790 1364236 ~ 1368869 (+) False LOC117599969
TU370650 lncRNA downstream 615855 1522301 ~ 1522511 (+) True G312877
XM_026940929.2 mRNA upstream 4610 898058 ~ 901624 (+) True tmem70
XM_034314625.1 mRNA upstream 4610 898218 ~ 901624 (+) False tmem70
XM_026941381.2 mRNA upstream 32468 868721 ~ 873766 (+) True rdh10b
XM_026941377.2 mRNA upstream 59217 820530 ~ 847017 (+) True jph1b
XM_026941295.2 mRNA upstream 178369 723451 ~ 727865 (+) True cbln2a
XM_026941207.2 mRNA downstream 40346 946792 ~ 965617 (+) True trpa1a
XM_026940965.2 mRNA downstream 97463 1003909 ~ 1012192 (+) True shhb
XM_026940830.2 mRNA downstream 147422 1053868 ~ 1066467 (+) True cnpy1
XM_034314541.1 mRNA downstream 147422 1053868 ~ 1066467 (+) False cnpy1
XM_034314540.1 mRNA downstream 147449 1053895 ~ 1066467 (+) False cnpy1
TU370232 other upstream 67712 820555 ~ 838522 (+) False jph1b
XR_004576918.1 other upstream 593506 275159 ~ 312728 (+) False snap91a
TU369780 other upstream 713000 189539 ~ 193234 (+) True pnrc2
TU369781 other upstream 713000 189539 ~ 193234 (+) False pnrc2
TU369797 other upstream 730693 174238 ~ 175541 (+) True G312191
TU370320 other downstream 222479 1128925 ~ 1131683 (+) False paxip1
TU370328 other downstream 225437 1131883 ~ 1136020 (+) False paxip1
XR_003404390.2 other downstream 1059294 1965740 ~ 1977309 (+) True c21h5orf22
XR_003404395.2 other downstream 1226768 2133214 ~ 2143313 (+) False tgs1
TU370902 other downstream 1275533 2181979 ~ 2185677 (+) True G313112

Expression Profile