RNA id: XM_034314536.1


Basic Information

Item Value
RNA id XM_034314536.1
length 3616
RNA type mRNA
GC content 0.53
exon number 22
gene id paxip1
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 1128909 ~ 1147376 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCGGCCAGTCACCTCTCTTCAGTCGCAAAGCTGTTCAGGAGACTCAATAATGTTTCTGCTATTATCGATATAAGTTAATTCAAaggttttgtgttatttattaaaatctaaTAATGTTGGAAGAAGAGTTGAAAGTCCCTGACGAGCTTTTTAAGGAGGTGAAGTTTTATGTCGTCGGGGATATTGACCAAAAGGTGGTGCAGCTGCTGAAGTCggggaaaggaaaggaagtgTCGTACATCGCCCTCGCCACGCACATCATCACGGAGGATGGAGACAACTCCGAGGTCAGCGAGGCGCGCGAGGTCTTCTTCTTACCTGTGGTAAAGCCCACGTGGGTGATCCTCTCGGTCCGATGTGGCGACCTGCTTCCCGTCACGGGCTTTTCTCCCGAGTCGGGCCAGTTGTTCTTCGGCCTGACGGAGGATCTCAGCACCCTGTGGGCCTTTATTACGTTTTACGGAGGAGAATGTCAGCTGAATTTCAACAAGAAGTGTACACATCTGGTGGTTCCTGAACCCAAGGGGGCAAAATACGAATGCGCTCTGAGACACAGCGGGATTAAAATCGTCACGCCGGAGTGGATCACCAACTCGGTTAAGGACAAGAGCAGGAAGGATGAGGCGCTTTACCACCCGAGGCTCACCTACTacgaggaagaggaagaggaggaggaagatgaggtCAGCGAGGACGAGAACGAGCGTAGTTCGCGCTCCGAAGGCAGCAAGCGCTCCAGCCCTGCCTCGTCGCGAGGGGCGTCGCCTTCCAGGCGTCCTTCGCCCAAAGCCGAGGTCATGTTCGACGACTCGGACGAATCGGATAAAGAGGAGCTCAACCTGAACTGGACGCTGTCTAAGCACCGCCTCCAACCGAGCAAAGACACGGCGCTCATTAACCTGTGCGACAGCGTTCCTCCTGTGCCAGGTAACGCCCAGGGGGCGGAGCGTTCCGAGATGATTGGTGGGTGGAATTCTGGGCCACGCCCATTGCGGAACATCACTAAGAGCGGAGAGCAGCAGCTTCCGCGGCCGGCCAACGTCGCACACATTCTCCAGAGTCTGACCTCTAAAAGCGTCGAACCGCAGGGGAATCAGAACCAACCCGGCGTCCCGAATCAGCTGCTCTTCAACGCTATCCCTCtaccaccacaacaacaacaacaacagcaacaacaacaacaacaacaacatgcgCAGCAGATGCTCCAGCAGCATCCCATGATGCACCTGCAGCCGCCGCCGGGCATGCAAATACATCAtccgcagcagcagcagcagcaacaagcGCCGCCGCCGCAGCAGGCAGGGTTTCCTCAAATGCCGCAACAGCCGCATCAGTTCCTGCAGCAGCAGATGCACCAGCAGTTGTActcgcagcagcagcagcagcatccgCAACAGCAGCACGGCTTCCTGCAGCAGCAACTGCGACCGCCGCAGCAACAGCAGCTTCTCCGACCGCCCTTGCAGcaacagcagctgcagcagcaacagcagcatgtgttacagcagcagcagctgctgCAGCAACACAGGCTTCAGCTGcaactgcagcagcagcagcagcagcaacaacaacaacaacaacaacaacagcaacaacagcagcaaaatCAGCAGCAGTTGCACCAGCAACAtttgcaacaacaacaacaacagcagcagcagcatttcctgcaacagcagcaacagcacaTGCAGcacctgcagcagcagcagcaacacttgcagcagcagcaccagcagcagcaacagATGCAGAACACGCAGGCTCTGCAGCATCAGACGCAGACGCAGCTGCAGCTCGTGCAGCCGCATCAACTGCTGGGCCACGAACCCGGGCAGGAGATTCCTGAAGATGGCTTCCTCGTCGGCTGCGTCTTCGCCATCGCTGATTATCCGGAGCAGATGGCTGACAAGCAGCTCCTGGCCACGTGGAAGCGGATCATTCAGGCGTACGGCGGCTCCGTGGACTCGGCGTTGAATCGCTGCACTCACTTACTGTGTGAAAGTCAAGTCAGCAGCATGTACCTGCAGGCTTTGAGGGAAGGCAAGCGCTGCGTTACGGCTCACTGGCTCAACACGgtgctgaagaagaagaagatggttCCTCCTCACCGCACGCTCCATCTGCCCTTCAGCTTCCCCCCAGGAGCCAAACCCTGCTCGCAGCACattaTTTCAGTCACAGGGTTTGTGGACAGCGATCGAGAGGACCTGAAGCTCATGGCCTACTTAGCCGGAGCTCGCTACACGGGATACCTGTGTCGCAGCAACACCGTCCTCATCTGCAAAGAGCCGAGTGGGCTAAAGTACGAGAAGGCGAAGGAGTGGAGAATCCCGTGCGTAAACGCGCAGTGGCTGTGCGACATCCTGCTGGGAAATTTCGAGGCTTTACGGCAGATCCAGCACAGCCGATACACTCAGTTCAACTTAACCGAACCTCTCGCTCCGAACACACACCTCGTCCAGAACCTGCTGGCTGGTTGGAGAAATCCTGTAAAAGTCTCGCCGGAAGCGTTGGTGAGCCTCCGTCTgcagcagaaacagaaacaggccGAGGGAACCTCACAGCCACCTGCCAAGAAGCCCAAaaTAGAGGAGCTGCCCACGCCGTCTAAAAAGCTTCCTCCGGAGTCGACTCCGTATGTTTTCTTCACTGGTTTTGAAcctgttcaggcccagcagtaTATAAAGAGATTGTACGAGCTCGGCGGTGAAGTGGCGGAGAGCGCGCAGAAGTGCACTCATCTGGTGGCCAGCAAAGTGACGCGCACGGTCAAGTTCCTGACGGCCATCTCTGTCGTTAAGCACATCGTCACTCCGGAGTGGCTGCAGGAGAGCTGGAAATGCCAGAAATTTGTGGatgaacAGAGTTACATGCTGAGGGACGCCGAGGCTGAGGTGCTCTTCTGTTTCAGTCTGGAGGAATCACTAAAGAAAGCTCACGCTGCTCCACTCTTCAAGGGCAAATTCTTCTACATAACGCCGGGAATCTGTCCGAGCCTCAGCACCATGAGAGCCATCGTAGAGAGCGCCGGAGGGAAACTGCTGTCCAGACAGCCGTCCTTCCGTAAGATCATGGAGCACAAGCAGAACAAGAACCTACCGGAAATCATCCTCATCTCATGCGACAACGATCTGCATCTGTGCCGGGAATATTTTCTGAAGAACATCGATGTACACAACGCTGAGTTCATCCTCACAGGAGTACTGACGCAGACGCTGGATTATCAATCGTATAAATTCACATGATCGGGAGGACGTCCTCGGGAAGAGAACACTAAACTCTCTCTGTACTGGTCGACGCCGAaggttccttttttttataaatatatataaaagaaagacAATACAGTttgttcctttgttttttttttttttccttctttttctctttttttttttttgtacctggTTGACAAGTCTTTTTTGTAGAAATTActggtgggggaaaaaaataaataaataaatcgccgttattttttaatgattgttttAAATTATGGCACATTTTTcctggtttgtttttgtctcgCTTTTTGGAATAAAAGTCTCCTTATTGTGACCCAAACCAAACTCATTTTACGTCATTGTGTGTCGTGTAGGTaga

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006281 DNA repair biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K14972 PAXIP1, PTIP; PAX-interacting protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004580295.1 lncRNA upstream 24585 1089858 ~ 1104324 (+) True LOC117599954
XR_004580327.1 lncRNA upstream 148858 976621 ~ 980051 (+) True LOC117599981
TU370266 lncRNA upstream 222463 906234 ~ 906446 (+) True G312540
TU370257 lncRNA upstream 242795 883404 ~ 886114 (+) True G312534
TU370250 lncRNA upstream 253029 875663 ~ 875880 (+) True G312531
XR_004580318.1 lncRNA downstream 216000 1363376 ~ 1370691 (+) True LOC117599969
TU370578 lncRNA downstream 216860 1364236 ~ 1368869 (+) False LOC117599969
TU370650 lncRNA downstream 374925 1522301 ~ 1522511 (+) True G312877
XR_004580341.1 lncRNA downstream 477187 1624563 ~ 1662193 (+) False LOC113543035
XR_004580340.1 lncRNA downstream 477187 1624563 ~ 1640641 (+) False LOC113543035
XM_026940830.2 mRNA upstream 62442 1053868 ~ 1066467 (+) True cnpy1
XM_034314541.1 mRNA upstream 62442 1053868 ~ 1066467 (+) False cnpy1
XM_034314540.1 mRNA upstream 62442 1053895 ~ 1066467 (+) False cnpy1
XM_026940831.2 mRNA upstream 62442 1054144 ~ 1066467 (+) False cnpy1
XM_026940965.2 mRNA upstream 116717 1003909 ~ 1012192 (+) True shhb
XM_026940999.2 mRNA downstream 203887 1351263 ~ 1357482 (+) True cahz
XM_034314849.1 mRNA downstream 740374 1887750 ~ 1935629 (+) True cdh6
XM_026941232.2 mRNA downstream 754925 1902301 ~ 1935629 (+) False cdh6
XM_026941180.2 mRNA downstream 818364 1965740 ~ 1976354 (+) False c21h5orf22
XM_034314865.1 mRNA downstream 835940 1983316 ~ 2018166 (+) True zgc:163121
TU370232 other upstream 290387 820555 ~ 838522 (+) False jph1b
XR_004576918.1 other upstream 816181 275159 ~ 312728 (+) False snap91a
TU369780 other upstream 935675 189539 ~ 193234 (+) True pnrc2
TU369781 other upstream 935675 189539 ~ 193234 (+) False pnrc2
TU369797 other upstream 953368 174238 ~ 175541 (+) True G312191
XR_003404390.2 other downstream 818364 1965740 ~ 1977309 (+) True c21h5orf22
XR_003404395.2 other downstream 985838 2133214 ~ 2143313 (+) False tgs1
TU370902 other downstream 1034603 2181979 ~ 2185677 (+) True G313112
trnae-cuc_41 other downstream 1346856 2494232 ~ 2494303 (+) True trnae-cuc_41
XR_004580350.1 other downstream 1507824 2655200 ~ 2662399 (+) True LOC117599997

Expression Profile