RNA id: TU370578


Basic Information

Item Value
RNA id TU370578
length 1156
lncRNA type inter_gene
GC content 0.37
exon number 3
gene id LOC117599969
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 1363376 ~ 1370691 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGTTGCGACTCTGAACACAAATAGCCTCAGGGGATCCTGAGATGTTTATGTCTTGAACGCCCAAACCACACATCTTGTATGTCGTTCTTTAACCCTggattataataataagaagaacgTCACCAACAGTTTATTTCTGACAGACTCCTGAGTACGTGCTGTGTAATTTATCACGTGACGGTACAAACCTCGTTCCTGGGAAGAGACGCCTGGACCTGAATAACGTGTTCAaGGTGCTTTTGGTGCACGAGGTGTGGGAACGAGGAATGAGTAAACATGACTCACGTGAGGGCAGAAACATTAACTACACTCCAGATCTACGTTTCAGATCATGTGTCGGTGGATCTGGACCTGAAGAACCATCATATCGGCTTTGATCTGTCAATCAAACACAGAGTTTAAAACGGCACAGAATTCCACAGTGTCTCCTTACTTCCTTCTTTAGGTCGCTACAGAGTAATGTAAGCGTATAGCCACCaatttagcattgtgcaaattaACTGCATATCTGAATCATCACATATTTAACTACAGTAACATCTTTCGTATGTACAGTTTCATAAAATAGAAGCAAATCAGGTTATTTTAACCATTATGAAAAttaatcacattttcacatgatgAACCAAATGAATCACACGTGAAAATGAACGAATCgcatgtgaaaataagtgaatcacatttgaaaataaacgaatcacacgtgaaaattaatgaatcacatgtgaaaatgaatgaatcacatgtgaaaatgaatgaatcacatgtgaaaataaacgaatCACGTGACAATAATCGAATCACGTGAAAAAAAAAcgaatcacgtgaaaataaatgaattgtaacAATCACATGGCAATAAAAACACATGTGAAAAGTGAAAGAGGTGTGAAACACAACATGTGAAGAGTCTAAAAACCACATGTGTAAAGTAaagtgacttttctgtaagggaaaTTAAACAAATCATCTGAATTTATTCTAACATCACACTTTTACGCTTTAGAAAGAAATAACTTCATAAAAAAAGCGATTTGTCTTTAAGATTTTGCCTTTTTAGCTCTGAGATGTCCTTTTTGTCCTTATGTTTATAGATGACAGCGTGGAGACGCTTCTGTGGCTGCGGATTTagtgctaaactggtagctataaggTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004580295.1 lncRNA upstream 259912 1089858 ~ 1104324 (+) True LOC117599954
XR_004580327.1 lncRNA upstream 384185 976621 ~ 980051 (+) True LOC117599981
TU370266 lncRNA upstream 457790 906234 ~ 906446 (+) True G312540
TU370257 lncRNA upstream 478122 883404 ~ 886114 (+) True G312534
TU370250 lncRNA upstream 488356 875663 ~ 875880 (+) True G312531
TU370650 lncRNA downstream 153432 1522301 ~ 1522511 (+) True G312877
XR_004580341.1 lncRNA downstream 255694 1624563 ~ 1662193 (+) False LOC113543035
XR_004580340.1 lncRNA downstream 255694 1624563 ~ 1640641 (+) False LOC113543035
XR_003404382.2 lncRNA downstream 255694 1624563 ~ 1639808 (+) False LOC113543035
XR_004580342.1 lncRNA downstream 255694 1624563 ~ 1636507 (+) False LOC113543035
XM_026940999.2 mRNA upstream 6754 1351263 ~ 1357482 (+) True cahz
XM_034314536.1 mRNA upstream 216860 1128909 ~ 1147376 (+) True paxip1
XM_034314541.1 mRNA upstream 297769 1053868 ~ 1066467 (+) False cnpy1
XM_034314849.1 mRNA downstream 518881 1887750 ~ 1935629 (+) True cdh6
XM_026941232.2 mRNA downstream 533432 1902301 ~ 1935629 (+) False cdh6
XM_026941180.2 mRNA downstream 596871 1965740 ~ 1976354 (+) False c21h5orf22
XM_034314865.1 mRNA downstream 614447 1983316 ~ 2018166 (+) True zgc:163121
XM_026941178.2 mRNA downstream 626742 1995611 ~ 2018166 (+) False zgc:163121
TU370328 other upstream 228216 1131883 ~ 1136020 (+) False paxip1
TU370320 other upstream 232553 1128925 ~ 1131683 (+) False paxip1
TU370232 other upstream 525714 820555 ~ 838522 (+) False jph1b
XR_004576918.1 other upstream 1051508 275159 ~ 312728 (+) False snap91a
TU369781 other upstream 1171002 189539 ~ 193234 (+) False pnrc2
XR_003404390.2 other downstream 596871 1965740 ~ 1977309 (+) True c21h5orf22
XR_003404395.2 other downstream 764345 2133214 ~ 2143313 (+) False tgs1
TU370902 other downstream 813110 2181979 ~ 2185677 (+) True G313112
trnae-cuc_41 other downstream 1125363 2494232 ~ 2494303 (+) True trnae-cuc_41
XR_004580350.1 other downstream 1286331 2655200 ~ 2662399 (+) True LOC117599997

Expression Profile