RNA id: XR_004580318.1


Basic Information

Item Value
RNA id XR_004580318.1
length 3846
lncRNA type inter_gene
GC content 0.39
exon number 4
gene id LOC117599969
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 1363376 ~ 1370691 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtgtgttgtaaatgatattttacttcCTTACACTCTTGCTTGTAGCCATTTCTAAGCACTAATTTTTATCTAgcattagctagcattagcgtAAAACATGTTATACCACGAGAGTGAGAACAGGGACGaacttgtggatgttccacaacctTAAATATAACCATCAATGGAAAACCATACGACTTGTTgatccttaataaataaaatgttgcaATCGTTTGAAAAACTGCTGtagtctaagaggaataaaacaataaaataatcaacttcagtgtggtaagAGGAACTCTGCTTCATTACTCCAACTcattgttgattagtttcctgttaGAGCACGacatgtagtgttttattccttacttacgaCATCTCTTCTAATTGTAAATAGAACTAAAGCAGTTTTCATTTGTTATAAgctaaaatgtaaatcaaaatgactcttttaagattttattttcctGGATGCACAGTGAGTTGCTTCACTTCTAGGTTCACTCGAAGAAATCAGAAAGGTTGGAAAGTTTCCAAAATTCCAGTTTTGAGGTTCAAGGTTGGAGACAAAAGGAACTAATTACGGTTACTCCTATCTGATGTGAATGCATCATGTGAATGCAATGAATGTGTAACCTGTATGTGTGCTTGCAAGGCATTATGGGGAAGGATTGATGGCAAATAACTATCTATCATATAACTATAATTGTGTAACTATAACTAAGAATTTGTTAGAACGGATCGTGTGTCCTGTAGCATTTGGTACATTCCTAAAATGGCTACTTAAATGTTACGAACAGTATTTATACATGACGCTCAGGTTGCACTGCATGCTTACACCCATTATAGTTTCTGTTACTCCTACACAAAGTTGCGACTCTGAACACAAATAGCCTCAGGGGATCCTGAGATGTTTATGTCTTGAACGCCCAAACCACACATCTTGTATGTCGTTCTTTAACCCTggattataataataagaagaacgTCACCAACAGTTTATTTCTGACAGACTCCTGAGTACGTGCTGTGTAATTTATCACGTGACGGTACAAACCTCGTTCCTGGGAAGAGACGCCTGGACCTGAATAACGTGTTCAaGGTGCTTTTGGTGCACGAGGTGTGGGAACGAGGAATGAGTAAACATGACTCACGTGAGGGCAGAAACATTAACTACACTCCAGATCTACGTTTCAGATCATGTATGCATGTGTCGGTGGATCTGGACCTGAAGAACCATCATATCGGCTTTGATCTGTCAATCAAACACAGAGTTTAAAACGGCACAGAATTCCACAGTGTCTCCTTACTTCCTTCTTTAGGTCGCTACAGAGTAATGTAAGCGTATAGCCACCaatttagcattgtgcaaattaACTGCATATCTGAATCATCACATATTTAACTACAGTAACATCTTTCGTATGTACAGTTTCATAAAATAGAAGCAAATCAGGTTATTTTAACCATTATGAAAAttaatcacattttcacatgatgAACCAAATGAATCACACGTGAAAATGAACGAATCgcatgtgaaaataagtgaatcacatttgaaaataaacgaatcacacgtgaaaattaatgaatcacatgtgaaaatgaatgaatcacatgtgaaaatgaatgaatcacatgtgaaaataaacgaatCACGTGACAATAATCGAATCACGTGAAAAAAAAAcgaatcacgtgaaaataaatgaattgtaacAATCACATGGCAATAAAAACACATGTGAAAAGTGAAAGAGGTGTGAAACACAACATGTGAAGAGTCTAAAAACCACATGTGTAAAGTAaagtgacttttctgtaagggaaaTTAAACAAATCATCTGAATTTATTCTAACATCACACTTTTACGCTTTAGAAAGAAATAACTTCATAAAAAAAGCGATTTGTCTTTAAGATTTTGCCTTTTTAGCTCTGAGATGTCCTTTTTGTCCTTATGTTTATAGATGACAGCGTGGAGACGCTTCTGTGGCTGCGGATTTagtgctaaactggtagctataaggTTCCATTACTTTTTAGCAGCATTAGCTTCATATAGAGAAAGAGAACGACGGAATGCTTGAGATGCCGGACTGAGTGTAAATCATGTGTAGGTGGCTGGGTAATCAGGTACACTGAGTACAGCTGGGCCTCaaataaaatctgtgtgtgtatatatgtgtgtgtgtatatgtgtgtgtgtgtgtgtgtgtgtgtgtggtggagggGCACAGGGACGGATCCTTCTGAGGTACCAGGCAGCAGCTTGTACAGGTACACTGACACAGCATTAGTGAGCAgacacatgctctctctctctttctctctctctctctctctctctctcacacacacacacacacacacacacatatatatacacacacacctgtttgcAGAAGGAGGGATATTGCACTCTAACCACAAAGACACAACAACATTGAATTGAAAGATTACTAACCCACAGGGGTTagtttactctctctctctctctctctctcttctttacTTGCTTACAGGTTTTAGTCACATGATCACGGATTAGCTGTTGCACAACATGCCTTTTCACGCcattcatctcacacacacacacacacacacacacacacacgcaaatcgGAATCTAGAACGATAAGGAGAGTGACAGTTGGGTTGCTTCGTAGGACTGTGTAGCAAAGACAGAATGACTGACAGGGTGCTGCTTAAGTATCTCTCTTTacatactctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcaaataAAAGGCAGGCTGACCAAATACACTGCCTAAGGGATgattagagacagagagagagagagaggaagagagacggGCAGACATAGAGTCACAGAGATATCTCCCTCTCCTCTCatcccctttctttctttctttctttctttctttccctcaccCTCTTTCTCCTGTTCTAcatttctttctccatctctttacTCTCTTtgaatctttctctctttctctctgtctctatttactccatttcatttttaatcttttttttaaatcacttttacaTCTGTTTCAGCCATCACTCTATCTTTATCCCTCACTCTTTATCCCCTTTATccctcactcctctctctctctctctctctctctctctcacacacattattgCTTTGCATTTTCCCACGGCCTCTCTCAcccttccctcttttttttctacctgtttctctctctctctctctctctctctcacacacacacacacacacacacacacacacactgcccatcACCATCCTCCTCGCTCCCTTTTCAtctttgtctcttttctcttccttgtTTGTAACGCCTCAGTGCTCATGGTTTCCATAGCAACTGCATGTTCATGGATATGGTGTAGTGAAAACTTTGGCTGATTCAGAGGCAAACGCTCTTTAATCTTTTCCCTACAGCCAATGCACAGGCAGATACACACGTGTGTTTTGTCTGGATTTCTCCACAGTCAGTTGCAAAACTTCAATTCCCAGAACTACAGAATGTTTATCTGTTGctataaaaaacacaaactggaTAAACAATCTCACTTTACATCAAGCTTTTCAGTACTGTATCACGCTATCACACAGTTtgaattctggaatctgattggtcagaaggtgttgatttattttctataacagcagctcacaggtttatattaatacacttgttctaatacgttatcgtttccatagtaacagttcatttaCAGGGGCTTGTACAATGGAcgaaaaaaatgcatgtaatcACTGacctgtgaggagacatttatttaatatttatggaaggagtctccagtgtcagctctttgtaacatgacaagctgcgttttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004580295.1 lncRNA upstream 259052 1089858 ~ 1104324 (+) True LOC117599954
XR_004580327.1 lncRNA upstream 383325 976621 ~ 980051 (+) True LOC117599981
TU370266 lncRNA upstream 456930 906234 ~ 906446 (+) True G312540
TU370257 lncRNA upstream 477262 883404 ~ 886114 (+) True G312534
TU370250 lncRNA upstream 487496 875663 ~ 875880 (+) True G312531
TU370650 lncRNA downstream 151610 1522301 ~ 1522511 (+) True G312877
XR_004580341.1 lncRNA downstream 253872 1624563 ~ 1662193 (+) False LOC113543035
XR_004580340.1 lncRNA downstream 253872 1624563 ~ 1640641 (+) False LOC113543035
XR_003404382.2 lncRNA downstream 253872 1624563 ~ 1639808 (+) False LOC113543035
XR_004580342.1 lncRNA downstream 253872 1624563 ~ 1636507 (+) False LOC113543035
XM_026940999.2 mRNA upstream 5894 1351263 ~ 1357482 (+) True cahz
XM_034314536.1 mRNA upstream 216000 1128909 ~ 1147376 (+) True paxip1
XM_026940830.2 mRNA upstream 296909 1053868 ~ 1066467 (+) True cnpy1
XM_034314541.1 mRNA upstream 296909 1053868 ~ 1066467 (+) False cnpy1
XM_034314540.1 mRNA upstream 296909 1053895 ~ 1066467 (+) False cnpy1
XM_034314849.1 mRNA downstream 517059 1887750 ~ 1935629 (+) True cdh6
XM_026941232.2 mRNA downstream 531610 1902301 ~ 1935629 (+) False cdh6
XM_026941180.2 mRNA downstream 595049 1965740 ~ 1976354 (+) False c21h5orf22
XM_034314865.1 mRNA downstream 612625 1983316 ~ 2018166 (+) True zgc:163121
XM_026941178.2 mRNA downstream 624920 1995611 ~ 2018166 (+) False zgc:163121
TU370328 other upstream 227356 1131883 ~ 1136020 (+) False paxip1
TU370320 other upstream 231693 1128925 ~ 1131683 (+) False paxip1
TU370232 other upstream 524854 820555 ~ 838522 (+) False jph1b
XR_004576918.1 other upstream 1050648 275159 ~ 312728 (+) False snap91a
TU369780 other upstream 1170142 189539 ~ 193234 (+) True pnrc2
XR_003404390.2 other downstream 595049 1965740 ~ 1977309 (+) True c21h5orf22
XR_003404395.2 other downstream 762523 2133214 ~ 2143313 (+) False tgs1
TU370902 other downstream 811288 2181979 ~ 2185677 (+) True G313112
trnae-cuc_41 other downstream 1123541 2494232 ~ 2494303 (+) True trnae-cuc_41
XR_004580350.1 other downstream 1284509 2655200 ~ 2662399 (+) True LOC117599997

Expression Profile