Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004580342.1 |
| length | 1133 |
| lncRNA type | inter_gene |
| GC content | 0.50 |
| exon number | 5 |
| gene id | LOC113543035 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047615.1 |
| NCBI id | CM018561.1 |
| chromosome length | 21248730 |
| location | 1624563 ~ 1662193 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU370650 | lncRNA | upstream | 102052 | 1522301 ~ 1522511 (+) | True | G312877 |
| XR_004580318.1 | lncRNA | upstream | 253872 | 1363376 ~ 1370691 (+) | True | LOC117599969 |
| TU370578 | lncRNA | upstream | 255694 | 1364236 ~ 1368869 (+) | False | LOC117599969 |
| XR_004580295.1 | lncRNA | upstream | 520239 | 1089858 ~ 1104324 (+) | True | LOC117599954 |
| XR_004580327.1 | lncRNA | upstream | 644512 | 976621 ~ 980051 (+) | True | LOC117599981 |
| TU370796 | lncRNA | downstream | 258195 | 1894702 ~ 1894947 (+) | True | G313016 |
| TU370836 | lncRNA | downstream | 337592 | 1974099 ~ 1976715 (+) | True | G313053 |
| TU370833 | lncRNA | downstream | 479817 | 2116324 ~ 2123434 (+) | True | G313052 |
| TU371292 | lncRNA | downstream | 1037926 | 2674433 ~ 2674646 (+) | True | G313443 |
| XR_004580285.1 | lncRNA | downstream | 1094708 | 2731215 ~ 2736588 (+) | True | LOC117599939 |
| XM_026940999.2 | mRNA | upstream | 267081 | 1351263 ~ 1357482 (+) | True | cahz |
| XM_034314536.1 | mRNA | upstream | 477187 | 1128909 ~ 1147376 (+) | True | paxip1 |
| XM_034314541.1 | mRNA | upstream | 558096 | 1053868 ~ 1066467 (+) | False | cnpy1 |
| XM_034314849.1 | mRNA | downstream | 251243 | 1887750 ~ 1935629 (+) | True | cdh6 |
| XM_026941232.2 | mRNA | downstream | 265794 | 1902301 ~ 1935629 (+) | False | cdh6 |
| XM_026941180.2 | mRNA | downstream | 329233 | 1965740 ~ 1976354 (+) | False | c21h5orf22 |
| XM_034314865.1 | mRNA | downstream | 346809 | 1983316 ~ 2018166 (+) | True | zgc:163121 |
| XM_026941178.2 | mRNA | downstream | 359104 | 1995611 ~ 2018166 (+) | False | zgc:163121 |
| TU370328 | other | upstream | 488543 | 1131883 ~ 1136020 (+) | False | paxip1 |
| TU370320 | other | upstream | 492880 | 1128925 ~ 1131683 (+) | False | paxip1 |
| TU370232 | other | upstream | 786041 | 820555 ~ 838522 (+) | False | jph1b |
| XR_004576918.1 | other | upstream | 1311835 | 275159 ~ 312728 (+) | False | snap91a |
| TU369781 | other | upstream | 1431329 | 189539 ~ 193234 (+) | False | pnrc2 |
| XR_003404390.2 | other | downstream | 329233 | 1965740 ~ 1977309 (+) | True | c21h5orf22 |
| XR_003404395.2 | other | downstream | 496707 | 2133214 ~ 2143313 (+) | False | tgs1 |
| TU370902 | other | downstream | 545472 | 2181979 ~ 2185677 (+) | True | G313112 |
| trnae-cuc_41 | other | downstream | 857725 | 2494232 ~ 2494303 (+) | True | trnae-cuc_41 |
| XR_004580350.1 | other | downstream | 1018693 | 2655200 ~ 2662399 (+) | True | LOC117599997 |
