RNA id: XR_004580344.1


Basic Information

Item Value
RNA id XR_004580344.1
length 1478
lncRNA type inter_gene
GC content 0.47
exon number 5
gene id LOC113543035
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 1624563 ~ 1662193 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

taagacgaagaagaagagaTGGCGTTGTGCTGCTGCTCACCTGTAGAGACGCCGCCATCTTGTGGAAGGCCATGTTTGAGGCCCTGGAAGatgacTTCCTGAGAGGGAACAGCAGGAGCAGAATGCAGCCTCTCTCGCCACCGTGTGACCGGCATCCGGCAGCACCTCCACACCTGAGCCCTCGGTCAGCTGTGTGAcatagccacgcccacaaacaGgtgtctACTTTCATCGCGGTGCCAGTGGAACGATCTGGTGAGTGACAGACATCGTGGAGTTCCTGTCCTGTCGTCCATCTTGGAGCTCGTGCCTGTGGACACGCCCATCTTCCGCTCAGAGCACTCTGGGCAAGCGCAGTGCAGCGTCGTACCAGCAGCGCCACCCCACAGGTCTCCCAGCTACTGCTGCTGACCCTGGCTCCGCCCCTTTCCTCCCAAGTCCCCTCCAGTATCCACTTGACTGTTTGCAGTCCTGCAAAACCAGCACTGAAACCCAAGAGCTGCAGAAGCACCGTGGCTCTGCGAGTGTGAGCTCAGCGAATATGACATGGTCGTCGTCATCATCCCCTAAAAGACCAGGAGCTCTAGGAGAAGAGACAAAGGTACTAAACAGGAGTTCTAGCCAGTTACTGGTTGGGCAGCGTGTTGGCTTCTTGGCTGCCAATACTGGTCGTGGACGATGCTAGATGATGCATCGAATGACGTTAACTCAAAGTGAAGAAATGTCACATCTCTTCTGTGACATGTCTTCTGTGAAATGACACAACAGTTTCTGTCTACGTAACTGACCTGCCTCTTCACCGACCAAACAGCATTTACCTGACGCATATCACCACAGAGACACACATGGGAACACTGCATGCTAGCAAGTCTCTGCGTGCCGTGTTTACCCATGATCCCCCTGTACGCACTGCAACGCAAATATGCACTAACTTAGAAATATAAATTGGCCTTTATGGAGCAGTATGtaatttttagagccctctgctgttTACATTGTGAGTTGCaattaaaaaacctgacaaCTCTTCTTTCCTTGAAACTAGTTTTGTGTTTCAAGTTACTTTAAGATAACAGGCATAGCTGGGGAAGTCATGTTCTGAATGGGGGTAAAGCcgatttctgggccagaaaaattaAAACGAAATCCCGAAATGCAGAAACTAGCCAGATCCATTGTATTGTGATCTCGCAAATCGGACTTTCCTAGGCATCGACGATTGTAGGTTTGTAATAATCATTATTGTGATGCAGTGGCTGTTGCAAGAATTACATACTGTAccttttttcaaatatttgaaatattaataattgggtattaataaaaatggatATTTTAATAGATGTTCAAATTTGGTAGTTTCTTGATTGGTTCAAGAATGGTTGAAGGTAGATTATGccttcaatttttttaataattattagctCATtagttaagacattggactactAATCGGAAgtttgagagttcaaatccca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU370650 lncRNA upstream 102052 1522301 ~ 1522511 (+) True G312877
XR_004580318.1 lncRNA upstream 253872 1363376 ~ 1370691 (+) True LOC117599969
TU370578 lncRNA upstream 255694 1364236 ~ 1368869 (+) False LOC117599969
XR_004580295.1 lncRNA upstream 520239 1089858 ~ 1104324 (+) True LOC117599954
XR_004580327.1 lncRNA upstream 644512 976621 ~ 980051 (+) True LOC117599981
TU370796 lncRNA downstream 263295 1894702 ~ 1894947 (+) True G313016
TU370836 lncRNA downstream 342692 1974099 ~ 1976715 (+) True G313053
TU370833 lncRNA downstream 484917 2116324 ~ 2123434 (+) True G313052
TU371292 lncRNA downstream 1043026 2674433 ~ 2674646 (+) True G313443
XR_004580285.1 lncRNA downstream 1099808 2731215 ~ 2736588 (+) True LOC117599939
XM_026940999.2 mRNA upstream 267081 1351263 ~ 1357482 (+) True cahz
XM_034314536.1 mRNA upstream 477187 1128909 ~ 1147376 (+) True paxip1
XM_034314541.1 mRNA upstream 558096 1053868 ~ 1066467 (+) False cnpy1
XM_034314849.1 mRNA downstream 256343 1887750 ~ 1935629 (+) True cdh6
XM_026941232.2 mRNA downstream 270894 1902301 ~ 1935629 (+) False cdh6
XM_026941180.2 mRNA downstream 334333 1965740 ~ 1976354 (+) False c21h5orf22
XM_034314865.1 mRNA downstream 351909 1983316 ~ 2018166 (+) True zgc:163121
XM_026941178.2 mRNA downstream 364204 1995611 ~ 2018166 (+) False zgc:163121
TU370328 other upstream 488543 1131883 ~ 1136020 (+) False paxip1
TU370320 other upstream 492880 1128925 ~ 1131683 (+) False paxip1
TU370232 other upstream 786041 820555 ~ 838522 (+) False jph1b
XR_004576918.1 other upstream 1311835 275159 ~ 312728 (+) False snap91a
TU369781 other upstream 1431329 189539 ~ 193234 (+) False pnrc2
XR_003404390.2 other downstream 334333 1965740 ~ 1977309 (+) True c21h5orf22
XR_003404395.2 other downstream 501807 2133214 ~ 2143313 (+) False tgs1
TU370902 other downstream 550572 2181979 ~ 2185677 (+) True G313112
trnae-cuc_41 other downstream 862825 2494232 ~ 2494303 (+) True trnae-cuc_41
XR_004580350.1 other downstream 1023793 2655200 ~ 2662399 (+) True LOC117599997

Expression Profile