RNA id: TU370796


Basic Information

Item Value
RNA id TU370796
length 246
lncRNA type intronic
GC content 0.39
exon number 1
gene id G313016
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 1894702 ~ 1894947 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GATGTTAAAGTTTACAGCATGGGGGAAATCACATTACACAGCCATGTGTTCGGCCCGGCCACCATGTGCTTCGCTCATATACGCgcattaacacactcagtgaaaCTTTACCCTTTCTCGTTCAacaattacatacacatactcttaacattcaaactcattttagaaatgtattataatCATTTTAGTGACCTGATACCTGAGAAAAATAGGGAGAAATAATCGCGAGTGATACTGTGATGTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004580341.1 lncRNA upstream 232509 1624563 ~ 1662193 (+) False LOC113543035
TU370724 lncRNA upstream 253976 1624563 ~ 1640726 (+) True LOC113543035
XR_004580340.1 lncRNA upstream 254061 1624563 ~ 1640641 (+) False LOC113543035
XR_003404382.2 lncRNA upstream 254894 1624563 ~ 1639808 (+) False LOC113543035
TU370723 lncRNA upstream 257979 1624563 ~ 1636723 (+) False LOC113543035
TU370836 lncRNA downstream 79152 1974099 ~ 1976715 (+) True G313053
TU370833 lncRNA downstream 221377 2116324 ~ 2123434 (+) True G313052
TU371292 lncRNA downstream 779486 2674433 ~ 2674646 (+) True G313443
XR_004580285.1 lncRNA downstream 836268 2731215 ~ 2736588 (+) True LOC117599939
TU371318 lncRNA downstream 840172 2735119 ~ 2735384 (+) True G313465
XM_026940999.2 mRNA upstream 537220 1351263 ~ 1357482 (+) True cahz
XM_034314536.1 mRNA upstream 747326 1128909 ~ 1147376 (+) True paxip1
XM_034314541.1 mRNA upstream 828235 1053868 ~ 1066467 (+) False cnpy1
XM_026941232.2 mRNA downstream 7354 1902301 ~ 1935629 (+) False cdh6
XM_026941180.2 mRNA downstream 70793 1965740 ~ 1976354 (+) False c21h5orf22
XM_034314865.1 mRNA downstream 88369 1983316 ~ 2018166 (+) True zgc:163121
XM_026941178.2 mRNA downstream 100664 1995611 ~ 2018166 (+) False zgc:163121
XM_026941293.2 mRNA downstream 147253 2042200 ~ 2060017 (+) False LOC113543213
TU370328 other upstream 758682 1131883 ~ 1136020 (+) False paxip1
TU370320 other upstream 763019 1128925 ~ 1131683 (+) False paxip1
TU370232 other upstream 1056180 820555 ~ 838522 (+) False jph1b
XR_004576918.1 other upstream 1581974 275159 ~ 312728 (+) False snap91a
TU369781 other upstream 1701468 189539 ~ 193234 (+) False pnrc2
XR_003404390.2 other downstream 70793 1965740 ~ 1977309 (+) True c21h5orf22
XR_003404395.2 other downstream 238267 2133214 ~ 2143313 (+) False tgs1
TU370902 other downstream 287032 2181979 ~ 2185677 (+) True G313112
trnae-cuc_41 other downstream 599285 2494232 ~ 2494303 (+) True trnae-cuc_41
XR_004580350.1 other downstream 760253 2655200 ~ 2662399 (+) True LOC117599997

Expression Profile