RNA id: TU370833


Basic Information

Item Value
RNA id TU370833
length 7089
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G313052
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 2116324 ~ 2123434 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tttttaactcatcaGGGAATATAGTTTTTTCCCTCTGTGTTGAGCAGATATCTAGTCTGCCAACACTACAGCCCATTCATATTCAGTGGAGTTACCTCCTCTACACTACTCCTTTTTGGTCATCTAAATATATTTAGTGTTGTTCAGGCCTTGAAATTATGAATCTGCCATAACGCATTGCTCATTCATGAAGCGATGGGATTTAAACCATTCTGACATAGTGACACTACCTGTCATGTTGGACAACAGGACAAACAGGTGACCCAGTCTTGTGCTGATAAAACTCgtggagacaaaaaaaactcgCCAGGGTGAGGGGTGCTGAAACCCACGAGTCGTTTGACATCAGCAAAACTCTCGTAGTGCCAAAAAAAATCCCGGTCCATACTGGAATCCATAGTGGACATGGTGGACCTGGAGTCTCTGCCAGTaactgtacattaaaaaaaacagggcagCATTTCAATCATCTACTTgaatattgtataaaaaaaagtgaatgaaagaaagcCACGAGGGACTGACCCAGGCTCAAACACACAACTTCTCTCCTGGAGAAGGAACCAGGCCAAGAAAacacttcctggcagctcgGCTCATGCTGGCTGATATGGATCTCTCaagaaacactcacacactcacatatgtgctgagaaacacacacaacacacacaacacagagcaATCCACAGCAGCCAAGCACTCGTTGGAGCCAGGATGGATTCCACCTCCAAAAGATTAAAGATACAGTGTTCTGCTTGAGTCTGTGTGAACTCGCACGAGTGTTTATGATTACGattgtgtctgtgagtgtgtgtaggtgtgtattcGCTCTGCAGTACCAGACACGGCATCCACCGGTTCACGTGCCGCGTCTACAGAAATACAACACTGTATCTTTAAATCTGCCAAACAGCTCATCTGtatatgaaaggaaaaaaaaaattggtctcTTTCAGTTGAAAGTGCTTCTTAGTGTCTTTTTATAGGAGGTCAGAAGACGGCGAAGACGCATGGGGACGCCGGGAGAGGACGCAGTACGACAAGCACAAGACTTGAGCACAGCAAAAATTGTTCCTgtactgggggaaaaaatggtacAAGTCTGAAGTTCTTGATGCAGTCCTGATGTCCTGCATTGTTAGACTCGGACAAGGGTGACTGTTGTCTTTCTTTAGACGTGTGACATgattttctttgattttataTCAGGATTTTGATGGATTTGTGTGCGCGCTAGGCATGTGCCAATATTCCCAATATTCAGTTACACactaaatacacaataaatcaCAATTTGACACATTGTGGACACAAATTTTCATCACTACCCCTGCATTCAGTTCAGATCAAGGCTGTGTGGATTGgcatcattttttcattcattcattcattcattcatcctcagtaaccactttatcctggtcagggttgtggtggatctgaagcctatccctgGAATAATaggtgtgaggcaggaaaacaccctgaatgggacaccgtTCTATCACAGGATACTATACACTCATTCACCCCTAGGGGTAATGTAGAttagccagttcacctactggcagttttgggaggtgggaggaaactggaggaaatCCAAAGAACTGCCACATGGACACTGGGAAAACAaatatgtgaaactccacacagactgtaacaatgcttcccactgcaccaccatttTTGAAGTGTTTATTCATTCAAGGTAAAAACTATTCCATTCTTATGGCCAGTCACATTCTCCATAATTTGGTTCACCAAAGGACAATTTGAAGAAAGGTTAAATGACATGGCGGATAGAAATGCTGTCCCCTCTGAAGGCCTAGTCATGAAAGTTTTTCGTCATTGAATTTCAAAAAGCAGACACACAACAcatgaatttacattttcaacCTGCACTTTTAGGGTTAATGTAGGTTTCATGAGTGCAGACCACACCCTCAACGAAATGACATGAAGCATTATAGTGGAACTGTAAATAGTGGGGAGAACTCTGAGAACTTGGGCTTTGCGCTAGATATCCACATCTACCAGAAAGTCTTCAACAAGCAGGACTTGTTGAATAGTAGGAAGAGATGGATGGTGGTGGGTGTGGAAACTTCATCActagtggaaaaaaagagaaatgggaAGTTAACAAGTTAAAAGGTGGAGCTTCAGGCTCCCAAACCTTCCCATACTGAAGGACTCTTCAGTTTGTTCCTTTggaggaacctttaaaggttctatgtactCTGTACAGCAGAGGTTAATTTTCTCACCATGGATGtatgaaatttaataaaacacttcctgacCCCACTATAAATTATTGCATAAAAAGGTAGCACCTTCAGGGGCAGGATTAGACAGTAAATACTCTAGTGCCCTGCATAAATTCAAGTTTTCCCTGCTACTGAAACACGTGCTCTAGCTTGTGGAGAGGCTAATAATTAGTTCATGATCAGGATCAGGTGTGTCTGGAGCAGGAAAATCTTGAAAAAGCCTGGAGTTGAGAACTTCAGGTATGAACTCTCTTTGTGTTTTCACTGCTTGTGGTTGTTGGCTAGCTTGGTCTGAACTGAAGCTTCTTCAGCATTGTTTCTTTCTCATCACTATGTTGATCACCACAGCTAAAATTCTAATTCAGATCTATCTTTACAAAGTGCACCAAACCATTTTTGGTGCCAATCTTCCCATTCTGATTGTGAGCAGATGCAAATTGCAAATTTCTTTTAGTTAATTAGCATGACCTGAGGAGTGCTTTTTATAATCCAGTAGCAGAGTCATGATGATGTCATAGCCTGTGCTAAAAGTCTCATCATTTTCGTATACTGTAATTTGAAAGTTTAATATCGGGCACATGCATAGTGCGCGCACCACAATTTGGTTTACGCTTGTTGTTTTGAACTGCACAATGCTTCACTATATGCCATTAACTATATGAAGGTGACTATGATAGCACATTTGATTCAATTTACAATCAAAGTTAGAGATTAGAAGTCCAGTCACATGTTTAAATGCGATGAGATGAGCTTTAAATCCAAATCCTTTCAAATCCTGCCACTAATATAAAGAATTCTGTATTGTTGAGCAATTTAGTAAGACTGTTTAGTCAAATAACGAcatgtaaattgtaaaaatattcAAAGATCCAATGCCCCCATCCCCAAACTCagttctttgtttctttgcaatcagcattttcattgtttttcattgttaccttattttttttacagtgacaGATCATTACAAAACTCTGAGCAAGACCTTAATTCAAATAACCTCTAAAAAACCTCCCTCAGAGAGACACAATATAACTACTGGAAGAATTATGAGCATTACAATGTGaagattttcacacactgaaGTATAGACACACCAAAACCTTTCACAAGAAGATTGGACATTCCTGAATCTGATTTGGATCTAACTTTATGTACTGtgtttcagtggcagagtaatcATAAAACCTTCCACACTTTTGTTTGATCAGCCAGATACGATCTGTTTTCTCAGCAATGTTGATGTTCAGGTTGTGCAACTGCTCGCTCTAGAGCTGCTGGAGCTCGCTGACCTGTTCCCGTTGACACTGTTGTTCACTGTTTGCATTTCACTGTCGTCCATCATGTCCTCATAAACAAATCTCGGGTTGGCATGTCACCCCTTAATACCTTTCTATGATGTAGTCAAATTCCAAATACTCATTCAATCACTCACAACCACTCCCAATCATTTGCATACAAATCATTTGAGTACAAATCTGAATTTGAGGATGTAGAGCACGATGTCAACTAAAAGACAACAAGAGTGATTGTGGAACTATAAAAAGTGAGAAGAACTGGACGTTCTGGATTGGAGAAGGGTTGGAGTTCTGGACGTTCTGGACGACAAGTGTGGTCTTTCTCCCAAACTTAAACTCGCTTCATTTGCACTCCATTTcttagattatttttatttctgtatatgaACCTGTGGCTTTATGAACTATATAAAGTGAGGATGTAGCGATATTGGCCTCTCATTCTGGATTGGTTTCATGTTGAATTGGATTTCACATTGATCCCTGACCCCCTGCCGTATTTTATGCTCTGAACACATGTGATGTGTTCAGAGCTCAAAGCTTTCCCTGATCTTTTTCATAACTTGGCAAGAGCAGAGCGAGTTGCTGTAAAAACAGCTGTATCAGGTATCAGTTGATAGTGGGAGctctgatattgatattgtatcATAAATTGGATTGGTGCAGTCATAACATTAGACTATGTGAGCCAGAAGATATGTTTCCAACAAAGTTCTAGAATAATCCTGAATTAAATGTTTGCTGGACGGGGTTCTGTTTTGCATTCCCACCACATTGCAGGACTTTTGGTAATCTGGTTGGTGGTTCTGTAAAACCTGCAATTGACCAATCAGCAAAGTTTACTACAGTAACCTCTGGCACCAGTAGTTCCTTGTCCACAGAAAAGTACCGAATAAAATGGTCCCTGGTTCCTCTAGTGGAAATGTTAAtaagttcctgaaaaggttgCATCAGTGCCTAGACTTAGTACAATGTATTTGCTATTAAGAAATAATGGTCATGGTCCATTATGAAGGTCAGAACACTGGcttatattattattcacaaATCCATATTACTAATCCAAAAACATTATGGTGAAAACCAACCAGGACTAAAGATAAATGGCAGAAATTAGTTAAATAAGACGCTATAATGAGGAAATGTGAAACACAGGAATCTTAGAATCAGAGTTAAGTTAAGAACCTGCAAGACTTCGCCAAGAATAAAGGCAATTAAGGAGGTGTAAATGAACAAGTTATAAAGACATTACAAGGCAAATTGGTAATAAGACAGCATTTGTCAGAATACTTTATTGATGAACTACTCGTCACCGGTTTCGCAGTATAGCTGTATGGAAGAGATCCCAAAGGGACTCTTGCGCTTTTTTAGTCAGCCCACTCTGTGGTTCtggacaggaaacaggaagaacACTCTCTAAAAAGTGGCTCCTTAGGGGATCTTTGGATGAATGACCCTTCAAGCTTTCTAAAGGTCTCTATATGAAACCCTTTGGAACCACCTGTTATGGGGTTCCACCTAGAACCTTCATGGGTTTCTTGCAAGTGACAAACCCTTTAAGGTTACCAGATGGAACCTTAGTGATGAGGGTTCTCTAAAAGTAATGCTTTAGTGCAGTtggaaaacatttcaggacTGTAGTAGTATTAAGGATTGATCTTAATTCAATAAGCTAACCTTTCCAATTACAAACAAACACTTAAAGTGTTCCTCAAAGTTTATTTGGATAGTTATGGTTCTCATCTTCCTAgggaacccttgaagaacccttttttctaagagtgtaggtATTAACTGTGTAAGTGTATGGTACCAAATTATTGGtagttattttcttcttaatacctaGGACCTGTTAGGCATTTCAAATTTAGCAAACTGCCTTTGTACTTGGTAGACTCTTAGAAAAAAtgttcttcaaaggttctttaaaggtttatcggataattaagggttcttgaCATCCTATTCGGAACCTTTTCTCATAGGGAAACACTAGActtaacttttttgtttgtaagagcgtatatatattgtaaaagtTATATGTAGTTAACTAGCAGGACGTGTGAAATCATTGCACACTTCCTACTGTATCATTGTGtttaggtttattttaataaaatatccaTTAACTaccatttctgtctctctggaAAGACTATAAATGGTAATAACCTACCTCAAGATGGTGTAGTAAACAGAGCACCTCCAACTGTTGGTCTTGGTGAATGGAGTAGATGTGTTAGATGGTCCTAAGATGGAAGTTATTAACAGAAAATAAGTGGTACCTCAAGGTTCTGTGGTAGTGCCTGGAAGGTTGAGAGAGCCACTGTTCAGGGTCATTGAGGATGGATCGTAACCCCGGATTGGATTCTGCTGCCAAATGAAATAATGTAGTGATAATGAAGATGTGGCCAGGTGGGGGTTCTCCTGTTTATACCCAACTCATTAGAAAATCCGAGCTCAAAACTGGGACTTCAGATACTTTAAACGCAACGTAGGACAGTCAGGGAGATCgcttgttcattcattcattgctTTAAATGAACTTTCATTGGCATGGTTTTTAAACTTTCCCTCCACGTTTCCCATGCCAGTGATGGTGCAAAGTTGTgcccatctctttttttttattcatttcattcgAGTTACTGTGCTTCTACTGCAGGTGGATTTTACACGTTTTTACACGTACGATTGAGCTGATTTTGCAGTCTAACAATCAAaagacatgatgatgatgatgatgatgatgatgactgttACAGCTTGTGAAAGCTTGGAACTGTTGAAAAAGTGGTGCAGAAAGTgtgattatttgctttttttactttgatatgTGTATGCAGAGTCAAAGATTCAAAGATTCGACTTAACATATATGGTCGTCCCTCACCATTAGAATTAGATaattagattaaataaaatggCATAAGGAAAAAAAGTCCATATCTTTTGGTCTAATTAGTGGTTAACACCAGAGCACTTGGAATTAGTACAAGCACAGTAGTTTGATGAATTTTGGATAGATGTGTTTGAGTTAATACAGTGTACAGATGTTCTCGGAAGCTCGCCGACAGCCGTGGCCCGCAGACGGCTGttcaactgtaaataaatgtatgcaaatgtaCATGTTTAAACGAACATTCCTTTTTTGAGTCCTGACCGTAAAAAGGGTGTATGTTGACTAGAAGGCAACGATGAAACGCCAAGAAAATGGCAGTTCCATATGGCGTAATACAGATTAAAATCTAAACTAGTGTGGTGTACTTGACGtattaaatgggaaaaaaaaatttgcaaaaaagataaaaacctGTTCATTATTGGTCTAAGTTGCATTGTGTGATGAAAGTGCTTAAAATGCATCGACTCTGTTACCtgattttattgtatattgAAGAGTAAGACAAAAAGAGcattacatttttgtatatattggatttttgtaaatttttatttgattctaATGCAACACAAAGTACCAAATTCATTTAATAAAGTACACTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU370836 lncRNA upstream 139609 1974099 ~ 1976715 (+) True G313053
TU370796 lncRNA upstream 221377 1894702 ~ 1894947 (+) True G313016
TU370724 lncRNA upstream 475598 1624563 ~ 1640726 (+) True LOC113543035
TU370723 lncRNA upstream 479601 1624563 ~ 1636723 (+) False LOC113543035
XR_004580343.1 lncRNA upstream 484917 1624563 ~ 1631407 (+) False LOC113543035
TU371292 lncRNA downstream 550999 2674433 ~ 2674646 (+) True G313443
XR_004580285.1 lncRNA downstream 607781 2731215 ~ 2736588 (+) True LOC117599939
TU371318 lncRNA downstream 611685 2735119 ~ 2735384 (+) True G313465
TU371354 lncRNA downstream 665808 2789242 ~ 2789496 (+) True G313494
XR_003404407.2 lncRNA downstream 819053 2942487 ~ 2945207 (+) True LOC113543325
XM_026941278.2 mRNA upstream 144 2069361 ~ 2116180 (+) True xkr4
XM_026941293.2 mRNA upstream 56307 2042200 ~ 2060017 (+) False LOC113543213
XM_026941294.2 mRNA upstream 56307 2043248 ~ 2060017 (+) True LOC113543213
XM_034314865.1 mRNA upstream 98158 1983316 ~ 2018166 (+) True zgc:163121
XM_026941178.2 mRNA upstream 98158 1995611 ~ 2018166 (+) False zgc:163121
XM_026941306.2 mRNA downstream 9716 2133150 ~ 2145237 (+) False tgs1
XM_026941305.2 mRNA downstream 9779 2133213 ~ 2145237 (+) True tgs1
XM_026941059.2 mRNA downstream 23841 2147275 ~ 2168213 (+) True lyn
XM_026941060.2 mRNA downstream 23841 2147275 ~ 2168213 (+) False lyn
XM_026941061.2 mRNA downstream 45614 2169048 ~ 2176365 (+) True urod
XR_003404390.2 other upstream 139015 1965740 ~ 1977309 (+) True c21h5orf22
TU370328 other upstream 980304 1131883 ~ 1136020 (+) False paxip1
TU370320 other upstream 984641 1128925 ~ 1131683 (+) False paxip1
TU370232 other upstream 1277802 820555 ~ 838522 (+) False jph1b
XR_004576918.1 other upstream 1803596 275159 ~ 312728 (+) False snap91a
XR_003404395.2 other downstream 9780 2133214 ~ 2143313 (+) False tgs1
TU370902 other downstream 58545 2181979 ~ 2185677 (+) True G313112
trnae-cuc_41 other downstream 370798 2494232 ~ 2494303 (+) True trnae-cuc_41
XR_004580350.1 other downstream 531766 2655200 ~ 2662399 (+) True LOC117599997
XR_004580351.1 other downstream 531766 2655200 ~ 2662399 (+) False LOC117599997

Expression Profile